Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32718 | Canola | nucleus | 94.94 | 95.84 |
| CDY58572 | Canola | nucleus | 75.66 | 79.68 |
| CDX88661 | Canola | nucleus | 75.09 | 78.63 |
| AT5G58190.2 | Thale cress | nucleus | 76.59 | 77.46 |
| Zm00001d002008_P001 | Maize | cytosol | 9.36 | 68.49 |
| CDY51902 | Canola | cytosol | 13.48 | 46.45 |
| CDY57677 | Canola | mitochondrion | 12.36 | 38.6 |
| CDY50448 | Canola | cytosol | 17.42 | 36.47 |
| Solyc05g032850.2.1 | Tomato | nucleus | 40.07 | 35.43 |
| GSMUA_Achr1P10560_001 | Banana | nucleus | 28.84 | 34.61 |
| CDY23562 | Canola | nucleus | 39.14 | 33.71 |
| CDY44025 | Canola | nucleus | 39.14 | 33.6 |
| CDY69959 | Canola | nucleus | 25.09 | 33.58 |
| CDY43378 | Canola | nucleus | 38.39 | 33.39 |
| CDY50867 | Canola | nucleus | 24.91 | 33.25 |
| CDY42891 | Canola | nucleus | 24.91 | 33.25 |
| CDY24224 | Canola | nucleus | 38.2 | 33.22 |
| Os08t0556000-01 | Rice | nucleus | 38.2 | 32.69 |
| CDY39299 | Canola | nucleus | 25.84 | 32.62 |
| CDY07437 | Canola | nucleus | 25.66 | 32.54 |
| CDX91541 | Canola | mitochondrion | 9.93 | 32.52 |
| CDY21154 | Canola | nucleus | 24.72 | 32.43 |
| CDY29972 | Canola | nucleus | 24.72 | 32.2 |
| GSMUA_Achr4P12480_001 | Banana | cytosol | 34.83 | 32.01 |
| CDY56809 | Canola | cytosol | 26.59 | 31.7 |
| TraesCS1B01G057800.3 | Wheat | nucleus | 38.02 | 31.62 |
| EES14722 | Sorghum | nucleus | 35.02 | 31.48 |
| CDY22270 | Canola | cytosol | 26.4 | 31.47 |
| TraesCS1A01G044500.1 | Wheat | nucleus | 37.83 | 31.46 |
| TraesCS1D01G045100.1 | Wheat | nucleus | 37.45 | 31.15 |
| HORVU1Hr1G008330.2 | Barley | nucleus | 37.27 | 31.0 |
| CDX87395 | Canola | cytosol | 25.66 | 30.86 |
| GSMUA_Achr4P11560_001 | Banana | nucleus | 37.27 | 30.66 |
| Zm00001d024339_P001 | Maize | extracellular | 33.9 | 30.57 |
| TraesCS7A01G276800.3 | Wheat | nucleus | 35.77 | 30.56 |
| TraesCS7D01G276800.4 | Wheat | nucleus | 35.77 | 30.56 |
| TraesCS7B01G174500.1 | Wheat | nucleus | 34.27 | 30.55 |
| CDX88524 | Canola | cytosol | 25.28 | 30.54 |
| KXG25412 | Sorghum | cytosol | 36.52 | 30.52 |
| Zm00001d049360_P004 | Maize | extracellular | 33.71 | 30.2 |
| Os04t0608800-01 | Rice | nucleus | 31.84 | 29.93 |
| Zm00001d008913_P001 | Maize | cytosol, nucleus, peroxisome | 22.28 | 29.82 |
| Zm00001d031981_P002 | Maize | cytosol | 36.33 | 29.8 |
| Os08t0224200-01 | Rice | mitochondrion | 34.46 | 29.73 |
| HORVU7Hr1G069070.2 | Barley | cytosol | 32.58 | 29.49 |
| TraesCS7B01G182100.2 | Wheat | cytosol | 32.58 | 29.39 |
| VIT_11s0065g00160.t01 | Wine grape | nucleus | 40.45 | 29.39 |
| TraesCS7A01G291700.1 | Wheat | cytosol | 32.4 | 29.32 |
| CDX68000 | Canola | nucleus | 27.53 | 28.88 |
| CDY56132 | Canola | nucleus | 24.16 | 28.86 |
| KXG27074 | Sorghum | cytosol | 29.59 | 28.62 |
| CDY05744 | Canola | cytosol | 6.74 | 28.57 |
| CDX79309 | Canola | nucleus | 26.97 | 28.29 |
| Zm00001d002372_P002 | Maize | nucleus | 29.21 | 28.26 |
| CDX94944 | Canola | nucleus | 26.22 | 28.17 |
| CDY52966 | Canola | cytosol | 23.6 | 28.12 |
| TraesCS7D01G285000.1 | Wheat | endoplasmic reticulum | 32.02 | 27.94 |
| CDX93476 | Canola | nucleus | 26.03 | 27.8 |
| CDX90116 | Canola | nucleus | 26.78 | 27.45 |
| CDY67303 | Canola | nucleus | 26.78 | 27.45 |
| CDY24182 | Canola | nucleus | 27.72 | 27.36 |
| CDY23602 | Canola | nucleus | 31.27 | 26.76 |
| CDY43989 | Canola | nucleus | 31.65 | 26.66 |
| CDY11758 | Canola | nucleus, plastid | 27.15 | 26.17 |
| CDX82538 | Canola | nucleus | 31.27 | 26.09 |
| CDX75712 | Canola | nucleus | 30.71 | 25.87 |
| GSMUA_Achr4P04600_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 37.08 | 25.68 |
| Zm00001d047072_P001 | Maize | mitochondrion | 23.41 | 25.56 |
| CDY07089 | Canola | nucleus | 30.34 | 25.47 |
| HORVU7Hr1G058250.46 | Barley | cytosol, plastid | 22.1 | 24.89 |
| CDY43306 | Canola | cytosol | 27.53 | 23.98 |
| CDX93645 | Canola | nucleus | 25.66 | 22.39 |
| CDY60520 | Canola | cytosol | 5.24 | 21.21 |
Protein Annotations
| EnsemblPlants:CDY02802 | EnsemblPlantsGene:GSBRNA2T00114978001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY02802 | ProteinID:CDY02802.1 | SEG:seg | UniParc:UPI0004EF4BF6 | MapMan:16.5.2.1 |
Description
BnaC02g10870D
Coordinates
chrLK031937:+:520539..523508
Molecular Weight (calculated)
58729.1 Da
IEP (calculated)
5.308
GRAVY (calculated)
-0.777
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPASSRTQP NQIVSSGERA VMADNVGGDH HQQVSPGDER IVSSSSSSVA PPDPYSYYNV LQSPTNLYHP YDWDAVHSGY TQGFNSWDGY PQYAATTPEG
101: MHVPQVVYDG NSSFMYHQPG FTFNPYPPSM MMEGQVPFSP AYYPQYGAPS PMHFAQSEIG ADNSRYDPTS AYMVPFAGYG GGSLSGNQGG NALASPIPYP
201: QTMGILGPYD HNASQLPVHG SGVASSSSVG GYYHVGSYQT PNAGGSYYGA DNSVRSAPDI GKRREYSSVP TTNDLYGNRG PRASSRIESK NSSRLSSSAG
301: NSANGSSTAG PNPSLYNSPE FVTDYKNAKF FIVKSFSEDN VHRSIKYNVW ASTPHGNKKL DTAYRDAEKM GGKCPIFLFF SVNASGQFCG VSEMVGPVDF
401: EKDAGYWQQD RWSGQFPVKW HILKDVPNNR FSHILLQNND NKPVTHSRDS QEVKLRQGIE MLRIFKEYEA HTSILDDFSY YDERERQKVG EDGGRKEDGE
501: EETSSAVEQL SERLQAVTVE DGKEGEKEDL KEKT
101: MHVPQVVYDG NSSFMYHQPG FTFNPYPPSM MMEGQVPFSP AYYPQYGAPS PMHFAQSEIG ADNSRYDPTS AYMVPFAGYG GGSLSGNQGG NALASPIPYP
201: QTMGILGPYD HNASQLPVHG SGVASSSSVG GYYHVGSYQT PNAGGSYYGA DNSVRSAPDI GKRREYSSVP TTNDLYGNRG PRASSRIESK NSSRLSSSAG
301: NSANGSSTAG PNPSLYNSPE FVTDYKNAKF FIVKSFSEDN VHRSIKYNVW ASTPHGNKKL DTAYRDAEKM GGKCPIFLFF SVNASGQFCG VSEMVGPVDF
401: EKDAGYWQQD RWSGQFPVKW HILKDVPNNR FSHILLQNND NKPVTHSRDS QEVKLRQGIE MLRIFKEYEA HTSILDDFSY YDERERQKVG EDGGRKEDGE
501: EETSSAVEQL SERLQAVTVE DGKEGEKEDL KEKT
001: MDPASSSSSN QRNRIVSSGE RPVMADNGVQ QQVSHDDGRN IVSSSYSSSV VPSPDPAPYY NVLQTPTNLY HYDWDIANSG YAQGINTWDG YPRYATTTPE
101: AMHVPPVVYN DNSSLMYQYP GYGFNPYPSV MLEGQIPVSP AYYPQPFGAP SAMHYLPSDI DPTSAAYMIP YGQYGGGNYS GNQGDISLTS HIPYPQTMGI
201: LGPYDHNASQ VALHGSGVAS SSSLGGYYHV GSYQNPSSTP SYYGVDNRVR LTPDIGKRRE KDQGSISSTS DLYGNRGPRA SSRVKSKNSS KPCSTIGDSA
301: SDSSTAGPNP SLYNHPEFVT DYKNAKFFIV KSFSEDNVHR SIKYNVWAST PHGNKKLDTA YRDAEKMGGK CPIFLFFSVN ASGQFCGVSE MVGPVDFEKD
401: AGYWQQDRWS GQFPVKWHIV KDIPNNRFCH ILLQNNDNKP VTHSRDSQEV KLRQGIEMLR IFKEYEAHTS ILDDFGYYDE LEGQKVGEDG TRKKAGEEET
501: SVEQLSERLQ AVKVEDGKEE EKKELIAD
101: AMHVPPVVYN DNSSLMYQYP GYGFNPYPSV MLEGQIPVSP AYYPQPFGAP SAMHYLPSDI DPTSAAYMIP YGQYGGGNYS GNQGDISLTS HIPYPQTMGI
201: LGPYDHNASQ VALHGSGVAS SSSLGGYYHV GSYQNPSSTP SYYGVDNRVR LTPDIGKRRE KDQGSISSTS DLYGNRGPRA SSRVKSKNSS KPCSTIGDSA
301: SDSSTAGPNP SLYNHPEFVT DYKNAKFFIV KSFSEDNVHR SIKYNVWAST PHGNKKLDTA YRDAEKMGGK CPIFLFFSVN ASGQFCGVSE MVGPVDFEKD
401: AGYWQQDRWS GQFPVKWHIV KDIPNNRFCH ILLQNNDNKP VTHSRDSQEV KLRQGIEMLR IFKEYEAHTS ILDDFGYYDE LEGQKVGEDG TRKKAGEEET
501: SVEQLSERLQ AVKVEDGKEE EKKELIAD
Arabidopsis Description
ECT10Evolutionarily conserved C-terminal region 10 [Source:UniProtKB/TrEMBL;Acc:F4KDJ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.