CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86664
CDX89856
CDY15480

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	CDX86664	AT1G03900.1	21798944
AT1G79270.1	CDX89856	AT1G03900.1	21798944
AT1G79270.1	CDY15480	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87395	Canola	cytosol	96.15	95.72
Bra035104.1-P	Field mustard	cytosol	94.34	94.13
CDY56809	Canola	cytosol	83.71	82.59
CDY22270	Canola	cytosol	82.58	81.47
CDX68000	Canola	nucleus	86.2	74.85
CDX79309	Canola	nucleus	85.29	74.07
AT1G79270.1	Thale cress	nucleus	84.16	70.45
CDY51902	Canola	cytosol	16.29	46.45
CDY57677	Canola	mitochondrion	17.19	44.44
CDY50448	Canola	cytosol	23.08	40.0
KRH43645	Soybean	nucleus	52.04	39.72
KRH13810	Soybean	nucleus, plastid	51.81	39.69
VIT_19s0085g01100.t01	Wine grape	nucleus	51.81	38.75
CDX91541	Canola	mitochondrion	13.35	36.2
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	47.06	33.6
GSMUA_Achr6P26690_001	Banana	cytosol	45.25	32.84
CDY50867	Canola	nucleus	29.19	32.25
CDY42891	Canola	nucleus	29.19	32.25
CDY69959	Canola	nucleus	28.73	31.83
CDY05744	Canola	cytosol	9.05	31.75
Os01t0679900-01	Rice	nucleus	43.67	31.69
CDY07437	Canola	nucleus	30.09	31.59
CDY39299	Canola	nucleus	29.64	30.97
Zm00001d011602_P001	Maize	nucleus	41.86	30.38
CDY52966	Canola	cytosol	30.77	30.36
CDY29972	Canola	nucleus	28.05	30.24
CDY56132	Canola	nucleus	30.32	29.98
CDY21154	Canola	nucleus	27.38	29.73
TraesCS3B01G301100.1	Wheat	nucleus	45.48	29.22
TraesCS3D01G267900.1	Wheat	nucleus	45.25	29.07
CDY24182	Canola	nucleus	35.52	29.02
TraesCS3A01G267700.1	Wheat	nucleus	44.57	28.51
OQU87332	Sorghum	mitochondrion, nucleus	42.53	28.02
Zm00001d043860_P001	Maize	mitochondrion	41.4	27.11
CDX94944	Canola	nucleus	29.86	26.56
CDY23562	Canola	nucleus	36.88	26.29
CDX88661	Canola	nucleus	30.32	26.27
CDY43378	Canola	nucleus	36.43	26.22
CDX93476	Canola	nucleus	29.64	26.2
CDY43306	Canola	cytosol	36.2	26.1
CDY24224	Canola	nucleus	36.2	26.06
CDY44025	Canola	nucleus	36.65	26.05
CDY58572	Canola	nucleus	29.86	26.04
CDY23602	Canola	nucleus	36.43	25.8
CDX93645	Canola	nucleus	35.52	25.65
CDY67303	Canola	nucleus	30.09	25.53
CDX90116	Canola	nucleus	30.09	25.53
CDY02802	Canola	nucleus	30.54	25.28
CDY43989	Canola	nucleus	36.2	25.24
CDY07089	Canola	nucleus	35.97	25.0
HORVU3Hr1G062620.8	Barley	mitochondrion	43.67	24.9
CDY32718	Canola	nucleus	29.64	24.76
CDX82538	Canola	nucleus	35.52	24.53
CDX75712	Canola	nucleus	34.84	24.29
CDY11758	Canola	nucleus, plastid	29.64	23.65
CDY60520	Canola	cytosol	5.66	18.94

Protein Annotations

EnsemblPlants:CDX88524	EnsemblPlantsGene:GSBRNA2T00148081001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF56	PFAM:PF04146
PFscan:PS50882	ProteinID:CDX88524	ProteinID:CDX88524.1	SEG:seg	UniParc:UPI0004EDC8C0	MapMan:16.5.2.1

Description

BnaC06g39680D

Coordinates

chrLK031855:+:1473147..1475245

Molecular Weight (calculated)

49867.3 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.689

Length

442 amino acids

Sequence
(BLAST)

001: MVTNLKVDPL AKVVSASTTS MKSRQSEPYY GTLETYQGLP CPYGGYYGLY YPSLDGSVGE AKDNGYYSYG TEAQYPVMQG ENGSLVYMMP GFQSYDVSST
101: YMPISPACVS SQALHSPMYA AQGYYQNQYG YGDVSSPTYL WEDKYVYGVA TSTKPLKQNI SSSSSYNPSN YYSKTKTSFT SHGMGARPKK SGALNRDETE
201: KAKARNKDNV NSTEGECESC VGSVIKRDQY NLPSFETKYE EAMFFVIKSY SEDDIHKSIK YSVWSSTLNG NKKLDSAYQE SQKKVAEKGG TCPVFLFFSV
301: NASGQFCGIA EMTGRVDYEK SMDFWQQDKW TGYFPVKWHI IKDVPNPQLR HVILENNENK PVTNSRDTQE VRLPQGSEVL NIFNSYAAKT SILDDFDFYE
401: NREKVMVQKK LRFPPAQIKK KEEEELVADL QTMEISKSGK LT

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.