Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019988.1-P | Field mustard | nucleus | 98.2 | 98.0 |
| CDX94944 | Canola | nucleus | 95.0 | 95.57 |
| AT1G09810.1 | Thale cress | nucleus | 71.2 | 75.74 |
| KRH26322 | Soybean | cytosol | 14.4 | 56.25 |
| CDY57677 | Canola | mitochondrion | 14.4 | 42.11 |
| GSMUA_Achr6P12810_001 | Banana | nucleus | 26.4 | 37.5 |
| CDY51902 | Canola | cytosol | 10.8 | 34.84 |
| CDY50448 | Canola | cytosol | 17.2 | 33.73 |
| CDX91541 | Canola | mitochondrion | 10.4 | 31.9 |
| CDY50867 | Canola | nucleus | 25.4 | 31.75 |
| CDY42891 | Canola | nucleus | 25.4 | 31.75 |
| CDY21154 | Canola | nucleus | 25.8 | 31.7 |
| CDY29972 | Canola | nucleus | 25.6 | 31.22 |
| CDY07437 | Canola | nucleus | 26.2 | 31.12 |
| CDY69959 | Canola | nucleus | 24.8 | 31.08 |
| CDY39299 | Canola | nucleus | 26.2 | 30.97 |
| CDY22270 | Canola | cytosol | 27.0 | 30.13 |
| CDY56132 | Canola | nucleus | 26.6 | 29.75 |
| CDX87395 | Canola | cytosol | 26.4 | 29.73 |
| CDY56809 | Canola | cytosol | 26.6 | 29.69 |
| CDX88524 | Canola | cytosol | 26.2 | 29.64 |
| CDY52966 | Canola | cytosol | 26.2 | 29.24 |
| KRH06073 | Soybean | cytosol, nucleus, peroxisome | 28.6 | 28.83 |
| CDX68000 | Canola | nucleus | 27.4 | 26.92 |
| Solyc01g103540.2.1 | Tomato | nucleus | 29.6 | 26.67 |
| CDX79309 | Canola | nucleus | 27.0 | 26.52 |
| PGSC0003DMT400064041 | Potato | cytosol | 30.2 | 26.49 |
| CDY58572 | Canola | nucleus | 26.8 | 26.43 |
| CDY23602 | Canola | nucleus | 32.8 | 26.28 |
| CDY05744 | Canola | cytosol | 6.6 | 26.19 |
| CDY32718 | Canola | nucleus | 27.6 | 26.09 |
| CDX88661 | Canola | nucleus | 26.6 | 26.08 |
| CDY02802 | Canola | nucleus | 27.8 | 26.03 |
| CDY24182 | Canola | nucleus | 27.8 | 25.69 |
| CDX75712 | Canola | nucleus | 32.4 | 25.55 |
| CDY43989 | Canola | nucleus | 32.2 | 25.39 |
| CDX82538 | Canola | nucleus | 32.2 | 25.16 |
| CDY23562 | Canola | nucleus | 30.4 | 24.52 |
| VIT_12s0035g00970.t01 | Wine grape | plastid | 34.6 | 24.43 |
| CDY24224 | Canola | nucleus | 30.0 | 24.43 |
| CDY07089 | Canola | nucleus | 31.0 | 24.37 |
| CDY44025 | Canola | nucleus | 30.0 | 24.12 |
| CDY43378 | Canola | nucleus | 29.2 | 23.78 |
| CDY67303 | Canola | nucleus | 24.6 | 23.61 |
| CDX90116 | Canola | nucleus | 24.6 | 23.61 |
| CDY11758 | Canola | nucleus, plastid | 25.0 | 22.56 |
| CDX93645 | Canola | nucleus | 26.0 | 21.24 |
| Os04t0129300-01 | Rice | nucleus | 28.6 | 21.19 |
| Os05t0105600-01 | Rice | cytosol | 27.0 | 21.16 |
| CDY43306 | Canola | cytosol | 25.4 | 20.72 |
| KXG21015 | Sorghum | nucleus | 26.4 | 20.21 |
| TraesCS2D01G012200.1 | Wheat | cytosol | 27.8 | 19.58 |
| TraesCS2A01G011400.1 | Wheat | nucleus | 27.8 | 19.55 |
| HORVU2Hr1G023660.2 | Barley | nucleus | 27.6 | 19.46 |
| TraesCS2B01G010200.1 | Wheat | cytosol | 27.6 | 19.33 |
| CDY60520 | Canola | cytosol | 4.8 | 18.18 |
| HORVU2Hr1G001810.8 | Barley | cytosol | 27.8 | 17.64 |
| Zm00001d048501_P002 | Maize | cytosol | 26.0 | 17.15 |
Protein Annotations
| EnsemblPlants:CDX93476 | EnsemblPlantsGene:GSBRNA2T00156145001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDX93476 | ProteinID:CDX93476.1 | SEG:seg | UniParc:UPI0004EDF094 | MapMan:16.5.2.1 |
Description
BnaA06g05720D
Coordinates
chrLK031876:+:365981..369355
Molecular Weight (calculated)
56467.4 Da
IEP (calculated)
8.602
GRAVY (calculated)
-0.861
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MATERNAMDS ELGTVTNADS TPKGHNEVFK ILLGELQTVI AADSTPKKHD ESPPTDDTSR MVTGSTTSSV TVSACADNGT GVVSSQPNKN GQAYATDFLK
101: ASHRDKNNSS YNNYQDSNLH GDRAVRSYCW SQTSVSSPGN LNVYGQLPSF TQSHAFRPTF KGKQASGQFT KHANQKTSSV PYSGYYGNGN TNSGFKDHRD
201: GHRKPERNGE SDSLVEMKCG PRTSAKTHPP PSDSSSSSLK QNSSFVLDLR REMFNLPDFQ TDYEDATFFV IKSYSEDDVH KSIKYSVWSS TVNGNKKLDA
301: AYRDAEAKTL VDGKKRPIFL FFSVNASRQF VGLAEMVGYV DMNKDLDFWQ VDKWCGFFPV EWHVVKDVPN WELCHIVLHN YEGKAVTHTR DTQEIKLREG
401: LQMLSIFKKF SAVTSLLDDM DFYEEREKSL RLKKEHKPAT LRMDLFKEKD YDYENGGNRR MNQDRGYNWS RTQQSLVNQT KNLSIRGGYS VSQNNTRNPR
101: ASHRDKNNSS YNNYQDSNLH GDRAVRSYCW SQTSVSSPGN LNVYGQLPSF TQSHAFRPTF KGKQASGQFT KHANQKTSSV PYSGYYGNGN TNSGFKDHRD
201: GHRKPERNGE SDSLVEMKCG PRTSAKTHPP PSDSSSSSLK QNSSFVLDLR REMFNLPDFQ TDYEDATFFV IKSYSEDDVH KSIKYSVWSS TVNGNKKLDA
301: AYRDAEAKTL VDGKKRPIFL FFSVNASRQF VGLAEMVGYV DMNKDLDFWQ VDKWCGFFPV EWHVVKDVPN WELCHIVLHN YEGKAVTHTR DTQEIKLREG
401: LQMLSIFKKF SAVTSLLDDM DFYEEREKSL RLKKEHKPAT LRMDLFKEKD YDYENGGNRR MNQDRGYNWS RTQQSLVNQT KNLSIRGGYS VSQNNTRNPR
001: MATEKNTLDS EATFAQTVPA LDSTTKKQDE SPPKSTPSLT VTACANGSDV VSSQPNDNGQ AHTTDFRKGN HRDKNSSDVY ADSTLRGDRP KGSNCLSQTS
101: FSAPKPLGNF NGAGRLPPNT QAHAFRPPFK GKEAAGQFLT FSNQKTSCVP YSGYINGNSN NGFWDQRDHN KKPERNGESD YLVELKCGPR ANAKTRPPSE
201: SSPLKQNNSF ALALRREMYN LPDFQTDYED AKFFVIKSYS EDDVHKSIKY SVWSSTINGN KKLDAAFRDA ETKTLEDGKK RPIFLFFSVN ASRQFVGLAE
301: MVGYVDFNKD LDFWQVDKWS GFFPVEWHVV KDIPNWELRH IILDNNEDKP VTHTRDTHEI KLKEGLQMLS IFKKYSAVTF LLDDMDFYEE REKSLRAKKE
401: HKPATLRMDL FKEKDYDYEM EGNRRMNHQE RGYNWNRSSN SKTQASLVNQ TKYLSIRGYS GYKKNTGNST
101: FSAPKPLGNF NGAGRLPPNT QAHAFRPPFK GKEAAGQFLT FSNQKTSCVP YSGYINGNSN NGFWDQRDHN KKPERNGESD YLVELKCGPR ANAKTRPPSE
201: SSPLKQNNSF ALALRREMYN LPDFQTDYED AKFFVIKSYS EDDVHKSIKY SVWSSTINGN KKLDAAFRDA ETKTLEDGKK RPIFLFFSVN ASRQFVGLAE
301: MVGYVDFNKD LDFWQVDKWS GFFPVEWHVV KDIPNWELRH IILDNNEDKP VTHTRDTHEI KLKEGLQMLS IFKKYSAVTF LLDDMDFYEE REKSLRAKKE
401: HKPATLRMDL FKEKDYDYEM EGNRRMNHQE RGYNWNRSSN SKTQASLVNQ TKYLSIRGYS GYKKNTGNST
Arabidopsis Description
ECT11Evolutionarily conserved C-terminal region 11 [Source:UniProtKB/TrEMBL;Acc:Q56XH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.