Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94944 | Canola | nucleus | 76.6 | 72.43 |
| Bra019988.1-P | Field mustard | nucleus | 75.96 | 71.26 |
| CDX93476 | Canola | nucleus | 75.74 | 71.2 |
| KRH26322 | Soybean | cytosol | 15.32 | 56.25 |
| GSMUA_Achr6P12810_001 | Banana | nucleus | 28.94 | 38.64 |
| AT3G03950.3 | Thale cress | cytosol | 29.57 | 32.48 |
| KRH06073 | Soybean | cytosol, nucleus, peroxisome | 30.43 | 28.83 |
| Solyc01g103540.2.1 | Tomato | nucleus | 32.55 | 27.57 |
| AT5G61020.1 | Thale cress | cytosol | 28.3 | 26.87 |
| PGSC0003DMT400064041 | Potato | cytosol | 32.55 | 26.84 |
| AT1G79270.1 | Thale cress | nucleus | 30.0 | 26.7 |
| AT5G58190.2 | Thale cress | nucleus | 30.0 | 26.7 |
| AT1G55500.5 | Thale cress | cytosol | 33.62 | 26.12 |
| AT3G13060.2 | Thale cress | nucleus | 33.4 | 24.76 |
| VIT_12s0035g00970.t01 | Wine grape | plastid | 37.02 | 24.58 |
| AT3G13460.1 | Thale cress | cytosol | 33.4 | 23.54 |
| AT3G17330.1 | Thale cress | nucleus | 29.57 | 23.36 |
| AT1G27960.1 | Thale cress | cytosol | 26.17 | 22.82 |
| AT1G48110.2 | Thale cress | nucleus | 30.21 | 22.22 |
| Os05t0105600-01 | Rice | cytosol | 29.36 | 21.63 |
| Os04t0129300-01 | Rice | nucleus | 30.64 | 21.33 |
| KXG21015 | Sorghum | nucleus | 28.3 | 20.37 |
| TraesCS2D01G012200.1 | Wheat | cytosol | 29.36 | 19.44 |
| TraesCS2A01G011400.1 | Wheat | nucleus | 29.36 | 19.41 |
| HORVU2Hr1G023660.2 | Barley | nucleus | 29.15 | 19.32 |
| TraesCS2B01G010200.1 | Wheat | cytosol | 28.94 | 19.05 |
| HORVU2Hr1G001810.8 | Barley | cytosol | 30.0 | 17.89 |
| Zm00001d048501_P002 | Maize | cytosol | 27.66 | 17.15 |
Protein Annotations
| MapMan:16.5.2.1 | Gene3D:3.10.590.10 | EntrezGene:837511 | ProteinID:AEE28496.1 | EMBL:AK221696 | EMBL:AK226991 |
| ArrayExpress:AT1G09810 | EnsemblPlantsGene:AT1G09810 | RefSeq:AT1G09810 | TAIR:AT1G09810 | RefSeq:AT1G09810-TAIR-G | EnsemblPlants:AT1G09810.1 |
| TAIR:AT1G09810.1 | Unigene:At.42210 | Symbol:ECT11 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR007275 | RefSeq:NP_172452.3 |
| PFAM:PF04146 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50882 | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 |
| UniProt:Q56XH8 | UniParc:UPI00004FF76F | InterPro:YTH_domain | SEG:seg | : | : |
Description
ECT11Evolutionarily conserved C-terminal region 11 [Source:UniProtKB/TrEMBL;Acc:Q56XH8]
Coordinates
chr1:-:3180926..3184224
Molecular Weight (calculated)
53528.1 Da
IEP (calculated)
9.053
GRAVY (calculated)
-0.950
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEKNTLDS EATFAQTVPA LDSTTKKQDE SPPKSTPSLT VTACANGSDV VSSQPNDNGQ AHTTDFRKGN HRDKNSSDVY ADSTLRGDRP KGSNCLSQTS
101: FSAPKPLGNF NGAGRLPPNT QAHAFRPPFK GKEAAGQFLT FSNQKTSCVP YSGYINGNSN NGFWDQRDHN KKPERNGESD YLVELKCGPR ANAKTRPPSE
201: SSPLKQNNSF ALALRREMYN LPDFQTDYED AKFFVIKSYS EDDVHKSIKY SVWSSTINGN KKLDAAFRDA ETKTLEDGKK RPIFLFFSVN ASRQFVGLAE
301: MVGYVDFNKD LDFWQVDKWS GFFPVEWHVV KDIPNWELRH IILDNNEDKP VTHTRDTHEI KLKEGLQMLS IFKKYSAVTF LLDDMDFYEE REKSLRAKKE
401: HKPATLRMDL FKEKDYDYEM EGNRRMNHQE RGYNWNRSSN SKTQASLVNQ TKYLSIRGYS GYKKNTGNST
101: FSAPKPLGNF NGAGRLPPNT QAHAFRPPFK GKEAAGQFLT FSNQKTSCVP YSGYINGNSN NGFWDQRDHN KKPERNGESD YLVELKCGPR ANAKTRPPSE
201: SSPLKQNNSF ALALRREMYN LPDFQTDYED AKFFVIKSYS EDDVHKSIKY SVWSSTINGN KKLDAAFRDA ETKTLEDGKK RPIFLFFSVN ASRQFVGLAE
301: MVGYVDFNKD LDFWQVDKWS GFFPVEWHVV KDIPNWELRH IILDNNEDKP VTHTRDTHEI KLKEGLQMLS IFKKYSAVTF LLDDMDFYEE REKSLRAKKE
401: HKPATLRMDL FKEKDYDYEM EGNRRMNHQE RGYNWNRSSN SKTQASLVNQ TKYLSIRGYS GYKKNTGNST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.