Factsheet for Os05t0105600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21015	Sorghum	nucleus	59.25	57.89
HORVU2Hr1G023660.2	Barley	nucleus	59.09	53.17
TraesCS2D01G012200.1	Wheat	cytosol	57.99	52.11
TraesCS2A01G011400.1	Wheat	nucleus	57.68	51.76
TraesCS2B01G010200.1	Wheat	cytosol	57.84	51.68
KRH26322	Soybean	cytosol	10.34	51.56
Os04t0129300-01	Rice	nucleus	53.45	50.52
Zm00001d048501_P002	Maize	cytosol	56.58	47.63
HORVU2Hr1G001810.8	Barley	cytosol	57.52	46.57
GSMUA_Achr6P12810_001	Banana	nucleus	23.04	41.76
AT1G09810.1	Thale cress	nucleus	21.63	29.36
CDX94944	Canola	nucleus	21.79	27.97
KRH06073	Soybean	cytosol, nucleus, peroxisome	21.47	27.62
Bra019988.1-P	Field mustard	nucleus	21.47	27.35
PGSC0003DMT400064041	Potato	cytosol	24.29	27.19
Os08t0556000-01	Rice	nucleus	26.49	27.08
Solyc01g103540.2.1	Tomato	nucleus	23.51	27.03
CDX93476	Canola	nucleus	21.16	27.0
Os07t0170300-01	Rice	plasma membrane	25.24	26.74
Os01t0679900-01	Rice	nucleus	25.39	26.6
Os04t0608800-01	Rice	nucleus	23.67	26.58
Os03t0748000-01	Rice	plasma membrane	27.12	26.17
Os08t0224200-01	Rice	mitochondrion	24.92	25.69
Os03t0158500-01	Rice	nucleus	26.8	24.19
VIT_12s0035g00970.t01	Wine grape	plastid	25.71	23.16
Os03t0317000-01	Rice	plasma membrane	22.88	20.59
Os01t0329800-01	Rice	cytosol	21.32	19.21

Protein Annotations

MapMan:16.5.2.1	Gene3D:3.10.590.10	EntrezGene:4337559	ProteinID:AAS88843.1	ProteinID:AAU44170.1	EMBL:AK069692
ProteinID:BAF16326.1	ProteinID:BAS91869.1	ProteinID:EEE62032.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	EnsemblPlantsGene:Os05g0105600	EnsemblPlants:Os05t0105600-01	PFAM:PF04146	PFscan:PS50882
PANTHER:PTHR12357	PANTHER:PTHR12357:SF35	UniProt:Q75M14	UniParc:UPI0000358519	RefSeq:XP_015640075.1	InterPro:YTH_domain

Description

YT521-B-like protein family protein. (Os05t0105600-01)

Coordinates

chr5:-:304132..311102

Molecular Weight (calculated)

73173.0 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.789

Length

638 amino acids

Sequence
(BLAST)

001: MQEEFDWPTL VLSTSPETEN VTSSSVRSTT KNDVVIQQGS ISSYWPWDVM KLENDTHFLS HSSGDGMKCT KADHFLSHAN RGSLNLDYQE QPSKSNFATD
101: LGSHAYSKEA RTLGRVYHGQ QPYFSPSSCS WEKSSALKVV PNSPDASGHI VGEMRTKTNI LSARSNYLSY PTDVPHIRYR DEVKVDLSQD DNSKQYRRPD
201: QFTAFSNFNG QSSEHLETAK GANYMDEITP ISRQWCFDNR GPSLPRGLVY GDEIPSLSSK KCNGNVASSY SRIWDYSAET TSVRQCYGDK IPSLSHHWHY
301: RDKIPLHSGQ WCHDAEARPL SNYQQGASYG NGRLRDNISR GGRNEQVNII SSRRTMTKPR VANKVVSSTD HYKINKDNLW RNSEDIRDQV RGPRANKLNN
401: SSTSSIKNNA IPPLVCRDQI NRPEFTVQYE HAKFFMIKSY SEDDVHKGIK YNVWASTPNG NNKLDAAFHE AQILMKEQGK RCPIFLFFSV NTSGQFVGLA
501: EMLGPVDFKK TMDFWQQDKW NGFFPVMWHI IKDIPNRFFK HITLENNEGK VVTFSRDTQE IGLPQGLEML KIFKAYHQGT SILDDFYFYE EKENMRHAQK
601: GRNLETTNQD LFSDDFRSIS VENLEASMQS LSFYETWE

Best Arabidopsis Sequence Match ( AT1G09810.2 )
(BLAST)

001: MHFAGSDVVS SQPNDNGQAH TTDFRKGNHR DKNSSDVYAD STLRGDRPKG SNCLSQTSFS APKPLGNFNG AGRLPPNTQA HAFRPPFKGK EAAGQFLTFS
101: NQKTSCVPYS GYINGNSNNG FWDQRDHNKK PERNGESDYL VELKCGPRAN AKTRPPSESS PLKQNNSFAL ALRREMYNLP DFQTDYEDAK FFVIKSYSED
201: DVHKSIKYSV WSSTINGNKK LDAAFRDAET KTLEDGKKRP IFLFFSVNAS RQFVGLAEMV GYVDFNKDLD FWQVDKWSGF FPVEWHVVKD IPNWELRHII
301: LDNNEDKPVT HTRDTHEIKL KEGLQMLSIF KKYSAVTFLL DDMDFYEERE KSLRAKKEHK PATLRMDLFK EKDYDYEMEG NRRMNHQERG YNWNRSSNSK
401: TQASLVNQTK YLSIRGYSGY KKNTGNST

Arabidopsis Description

ECT11Evolutionarily conserved C-terminal region 11 [Source:UniProtKB/TrEMBL;Acc:Q56XH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.