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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 3
  • plasma membrane 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0292200-01
Os05t0136200-01
Os07t0637000-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13460.1 Os01t0292200-01 AT3G17510.1 16113215
AT3G13460.1 Os05t0136200-01 AT3G17510.1 16113215
AT3G13460.1 Os07t0637000-01 AT3G17510.1 16113215
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG34475 Sorghum cytosol 69.1 64.4
Zm00001d007890_P002 Maize mitochondrion 67.28 62.02
Zm00001d018896_P002 Maize mitochondrion 67.77 57.79
TraesCS5D01G439100.1 Wheat nucleus 55.98 57.31
TraesCS5A01G431200.1 Wheat nucleus 55.98 57.22
TraesCS5B01G433000.1 Wheat cytosol 56.15 56.71
CDY57677 Canola mitochondrion 15.12 53.22
TraesCS5A01G431100.1 Wheat cytosol 55.32 51.87
TraesCS5D01G439200.1 Wheat cytosol 55.32 51.87
TraesCS5B01G432900.2 Wheat extracellular 55.15 51.23
HORVU5Hr1G104380.1 Barley plastid 55.98 50.98
HORVU5Hr1G104390.3 Barley plastid 54.98 48.11
Bra004105.1-P Field mustard nucleus 29.07 44.19
Bra008509.1-P Field mustard cytosol 30.73 43.74
CDY50448 Canola cytosol 18.44 43.53
CDX91541 Canola mitochondrion 11.63 42.94
CDY07437 Canola nucleus 29.57 42.28
CDY39299 Canola nucleus 29.24 41.61
CDY56132 Canola nucleus 30.56 41.16
Bra031960.1-P Field mustard nucleus 26.91 40.91
CDY69959 Canola nucleus 27.08 40.85
CDY52966 Canola cytosol 30.4 40.85
CDY42891 Canola nucleus 27.08 40.75
CDY50867 Canola nucleus 27.08 40.75
Bra036423.1-P Field mustard nucleus 27.41 40.64
CDY21154 Canola nucleus 27.41 40.54
AT3G03950.3 Thale cress cytosol 28.57 40.19
CDY29972 Canola nucleus 27.24 40.0
VIT_08s0007g07450.t01 Wine grape cytosol 44.52 38.62
VIT_06s0004g00200.t01 Wine grape nucleus 44.52 38.01
AT1G55500.5 Thale cress cytosol 38.04 37.85
AT5G61020.1 Thale cress cytosol 30.9 37.58
CDY23602 Canola nucleus 38.7 37.34
Os03t0748000-01 Rice plasma membrane 40.86 37.22
CDY43989 Canola nucleus 39.04 37.07
Bra027432.1-P Field mustard nucleus 38.7 36.75
KRH59123 Soybean nucleus 42.86 36.44
KRH43005 Soybean nucleus 42.19 35.93
Bra018951.1-P Field mustard cytosol 15.45 35.91
Bra014253.1-P Field mustard cytosol 17.61 35.57
CDY24182 Canola nucleus 31.89 35.49
CDX75712 Canola nucleus 37.21 35.33
Solyc01g028860.2.1 Tomato nucleus 41.36 35.27
AT3G13460.1 Thale cress cytosol 39.04 35.23
CDX82538 Canola nucleus 37.38 35.16
Bra001506.1-P Field mustard nucleus 37.21 35.05
Bra038524.1-P Field mustard cytosol 12.96 34.67
CDY07089 Canola nucleus 36.54 34.59
Bra039400.1-P Field mustard nucleus 36.38 34.43
Os03t0158500-01 Rice nucleus 40.2 34.23
PGSC0003DMT400061684 Potato endoplasmic reticulum, plasma membrane 41.36 33.83
KRH70155 Soybean nucleus 34.72 33.17
KRG94807 Soybean nucleus 36.05 32.93
KRH06717 Soybean nucleus 35.88 32.58
Os04t0608800-01 Rice nucleus 28.9 30.63
Os08t0556000-01 Rice nucleus 31.56 30.45
Os01t0679900-01 Rice nucleus 29.4 29.06
Os08t0224200-01 Rice mitochondrion 28.9 28.11
Os05t0105600-01 Rice cytosol 26.74 25.24
Os03t0317000-01 Rice plasma membrane 28.9 24.54
Os04t0129300-01 Rice nucleus 26.58 23.7
Os01t0329800-01 Rice cytosol 24.25 20.62
Protein Annotations
EnsemblPlants:Os07t0170300-01EnsemblPlantsGene:Os07g0170300EntrezGene:4342510Gene3D:3.10.590.10GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR007275InterPro:YTH_domainPANTHER:PTHR12357PANTHER:PTHR12357:SF34
PFAM:PF04146PFscan:PS50882ProteinID:BAD31793.1ProteinID:BAF20905.1ProteinID:BAT00239.1RefSeq:XP_015646788.1
SEG:segUniParc:UPI00001BF737UniProt:Q69LD0MapMan:16.5.2.1::
Description
YT521-B-like protein family protein. (Os07t0170300-01)
Coordinates
chr7:-:3726683..3731161
Molecular Weight (calculated)
66245.6 Da
IEP (calculated)
7.916
GRAVY (calculated)
-0.795
Length
602 amino acids
Sequence
(BLAST)
001: MEAPANSVAV ADGNPKTATE TPRVEDYKDA AMYYGTYPAY LYGAYGGWGE YSTYLSHDGA ETPTAGAYGD MYYGYSPYGY STSGHDSQMY GSQHYQYQPT
101: YNKQQNTTGK PSNNGKTENP AALPQGDVSA NGVDSLKGQK KTNLLPKASQ NTPGSNGSYG RPSGRFGNYQ NQTNRTTYPC YSSQIFNGKQ QKLPTGNRSL
201: TTSNSKSKGQ SRNQNTYPHL MGLQTPTSPL GPPSIYSASG MYGYNGSSYG SGLWYGSHLY GSGLYGGWNA LSDGKYNPRG RGNGSYGYIH GNQDGFNELR
301: RGPRSGLFNN QQGVGATVAP VKGQELSASD SSLSVMKDQY NRADFVETYS DAKFFIIKSY SEDDVHKSIK YNVWASTSNG NKKLDAAYQE AKEKSSDSSV
401: FLLFSVNASG QFVGLAEMVG RVDFNKTLEH WQQDKWTGCF PVKWHIVKDV PNSLLKHIIL ENNENKPVTN CRDTHEVKLE PGLQVLKIFK DHVCKTSLLD
501: DFDFYDNREK MMQERKAKHQ QLKKVVDEKL LNAVDTENSL LTVKSKLQET AEVEIDVLNK EPHGKAGQVD GKENGVLAVS VNGVTPEDVQ LTNEKLASLS
601: VC
Best Arabidopsis Sequence Match ( AT5G61020.2 )
(BLAST)
001: MANPDHVSDV LHNLSIDPTT KALAPDSETK GAYGGNGNDF LLNDELVEAT KIGKPSLLSK DGGVTKDKGS NLKKLGYQSA AYNAKGSYGK GAYAYGYYPP
101: AYQYPRHGYT GSYASGKTNL QYQYLTQQGR SAGNGQSYGG YMDNIYSNYG MCGPYTNGYG YGSYGYDSWK YMPNWYAVNN TYKPRNGYHG YGKENIEGLN
201: EMNRGPRAKG FNSQDGSKVM AVSLKEQRVT ETEKLSEDVS LLDPKDYNKI DFPETYTEAK FYVIKSYSED DIHKSIKYSV WSSTPNGNKK LDASYNEAKQ
301: KSDGCPVFLL FSVNTSGQFV GLAEMVGPVD FNKTVEYWQQ DKWIGCFPVK WHFVKDIPNS SLRHITLENN ENKPVTNSRD TQEVKLEQGI KVIKIFKDHA
401: SKTCILDDFE FYENRQKIIQ ERKSKHLQIK KQTLVANADK GVMSKINLVK PQESTTASED AAALGVAAEV TKESKVVKET ELPVEKNAVA TAC
Arabidopsis Description
ECT3ECT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UM32]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.