Factsheet for Solyc01g028860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g053210.2.1
Solyc12g098910.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	Solyc05g053210.2.1	AT3G17510.1	16113215
AT3G13460.1	Solyc12g098910.1.1	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	95.89	91.98
VIT_06s0004g00200.t01	Wine grape	nucleus	66.86	66.95
KRH43005	Soybean	nucleus	61.61	61.53
KRH59123	Soybean	nucleus	61.19	61.02
GSMUA_Achr7P01490_001	Banana	nucleus	46.6	58.75
AT1G55500.5	Thale cress	cytosol	50.0	58.35
GSMUA_Achr4P22630_001	Banana	nucleus	50.28	57.17
AT3G13460.1	Thale cress	cytosol	53.97	57.12
CDX82538	Canola	nucleus	51.56	56.88
CDX75712	Canola	nucleus	50.85	56.62
GSMUA_Achr4P21380_001	Banana	nucleus	52.69	56.53
Bra001506.1-P	Field mustard	nucleus	51.13	56.49
CDY43989	Canola	nucleus	50.42	56.15
CDY23602	Canola	nucleus	49.43	55.93
Bra027432.1-P	Field mustard	nucleus	50.0	55.68
CDY24182	Canola	nucleus	42.21	55.08
CDY07089	Canola	nucleus	49.58	55.03
Bra039400.1-P	Field mustard	nucleus	49.43	54.87
GSMUA_Achr5P02830_001	Banana	cytosol	47.45	54.38
GSMUA_Achr7P27220_001	Banana	cytosol	50.57	54.01
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	47.03	53.98
EER93461	Sorghum	nucleus	49.72	53.26
Os03t0748000-01	Rice	plasma membrane	49.29	52.65
Zm00001d034005_P003	Maize	plasma membrane	48.44	51.82
GSMUA_Achr4P14820_001	Banana	cytosol	23.65	50.45
TraesCS5B01G391500.1	Wheat	nucleus	47.03	50.15
TraesCS5D01G396400.3	Wheat	nucleus	46.88	50.0
Os03t0158500-01	Rice	nucleus	49.72	49.65
TraesCS5A01G386600.2	Wheat	nucleus	46.6	49.62
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	46.32	49.17
KXG40139	Sorghum	plastid	49.15	48.8
TraesCS4D01G273200.4	Wheat	cytosol	46.88	45.78
TraesCS4A01G031600.2	Wheat	cytosol	47.17	45.68
Zm00001d048424_P003	Maize	plastid	47.17	45.0
HORVU4Hr1G072940.4	Barley	cytosol	47.17	44.88
TraesCS5B01G433000.1	Wheat	cytosol	37.25	44.13
TraesCS4B01G274500.2	Wheat	plastid	47.73	43.94
TraesCS5D01G439100.1	Wheat	nucleus	36.4	43.71
TraesCS5A01G431200.1	Wheat	nucleus	36.4	43.63
EER93313	Sorghum	cytosol	35.13	43.36
Zm00001d027731_P012	Maize	plastid	47.59	41.84
Os07t0170300-01	Rice	plasma membrane	35.27	41.36
TraesCS5A01G431100.1	Wheat	cytosol	36.83	40.5
KXG34475	Sorghum	cytosol	36.83	40.25
HORVU5Hr1G104380.1	Barley	plastid	37.25	39.79
TraesCS5D01G439200.1	Wheat	cytosol	36.12	39.72
TraesCS5B01G432900.2	Wheat	extracellular	36.4	39.66
Zm00001d007890_P002	Maize	mitochondrion	35.13	37.98
Zm00001d018896_P002	Maize	mitochondrion	36.4	36.4
HORVU5Hr1G104390.3	Barley	plastid	35.27	36.19
Solyc01g103540.2.1	Tomato	nucleus	26.49	33.69
Solyc05g032850.2.1	Tomato	nucleus	27.62	32.28
Solyc12g099090.1.1	Tomato	cytosol	26.63	27.25

Protein Annotations

EnsemblPlants:Solyc01g028860.2.1	EnsemblPlantsGene:Solyc01g028860.2	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF63	PFAM:PF04146
PFscan:PS50882	SEG:seg	UniParc:UPI0002762F55	UniProt:K4AV67	MapMan:16.5.2.1	:

Description

No Description!

Coordinates

chr1:+:41111999..41116141

Molecular Weight (calculated)

77227.5 Da

IEP (calculated)

7.424

GRAVY (calculated)

-0.732

Length

706 amino acids

Sequence
(BLAST)

001: MAAGAPPADQ AADLLQNLSL DSRNKTLEIA DTKKKPSGNP TDGANGQLQS ADRSVTPVLP EFMDPNLCYV PNSYASTAYY YGYDASANEW EDYARYTNPD
101: GVEMPGVYGD NSSLIYHHAY GYAPYSPYSP ATSPVPTVGH DGQLYGSQQY HYPYFQPLPL TSTSNTSSAA LPKGEIATSA AAADQTSLSV DSAKGNSNVI
201: VNGGVKGNTG HMPVRPAFQN SSLNANGSYG PGTLPGGAAS GYQDPRLGFD GVRSPIPWID GSMFTDGQAR PVVNNSFTPS FSNGYAAPST KNQNVHPHVM
301: GMHHPRSSSS VNTTNGYMNR MYPNKYYGQF GNSFNSGMGF GPNRYDTRAT GRGGWMTVDN RSKPRGRGNS FYGYGNENMD GLNELNRGPR GKGSKNQKSS
401: TPVALAVKGQ NIPLAVTKDA EEDKPSLMPD REQYNHPDFP VTYADAKFFI IKSYSEDDVH KSIKYNVWAS TPNGNKKLDA AYQEAQQNSG GCPVFLFFSV
501: NTSGQFVGVA EMVGPVDFNK NVEYWQQDKW VGCFPVKWHI VKDVPNSLLK HITLENNENK PVTNSRDTQE VKVEQGLQVL KIFKDHISKQ CILDDFEFYE
601: DRQKRIQDKK AKQQLFQKQS QVWEGKATTE EKNRDHSKVD LKPQKPTEVS ACLNKENLPA AAQTSTVEVK LTEIVPVTKT GDDVKDVKPV TVSEKKPVAN
701: GASNGC

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.