Factsheet for Solyc01g103540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 2
cytosol 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064041	Potato	cytosol	96.76	94.21
KRH26322	Soybean	cytosol	12.79	55.47
VIT_12s0035g00970.t01	Wine grape	plastid	56.04	43.93
GSMUA_Achr6P12810_001	Banana	nucleus	27.57	43.47
KRH06073	Soybean	cytosol, nucleus, peroxisome	32.97	36.9
AT1G09810.1	Thale cress	nucleus	27.57	32.55
Bra019988.1-P	Field mustard	nucleus	26.85	29.74
CDX93476	Canola	nucleus	26.67	29.6
CDX94944	Canola	nucleus	26.49	29.58
Solyc01g028860.2.1	Tomato	nucleus	33.69	26.49
Solyc05g032850.2.1	Tomato	nucleus	28.65	26.32
KXG21015	Sorghum	nucleus	28.29	24.04
Os05t0105600-01	Rice	cytosol	27.03	23.51
Os04t0129300-01	Rice	nucleus	27.57	22.67
HORVU2Hr1G023660.2	Barley	nucleus	28.83	22.57
TraesCS2D01G012200.1	Wheat	cytosol	28.65	22.39
TraesCS2A01G011400.1	Wheat	nucleus	28.47	22.22
TraesCS2B01G010200.1	Wheat	cytosol	28.29	21.99
Solyc12g099090.1.1	Tomato	cytosol	27.21	21.88
Zm00001d048501_P002	Maize	cytosol	28.29	20.71
HORVU2Hr1G001810.8	Barley	cytosol	28.65	20.18

Protein Annotations

EnsemblPlants:Solyc01g103540.2.1	EnsemblPlantsGene:Solyc01g103540.2	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF62	PFAM:PF04146
PFscan:PS50882	SEG:seg	UniParc:UPI0002768403	UniProt:K4B1S9	MapMan:16.5.2.1	:

Description

No Description!

Coordinates

chr1:+:92127117..92133123

Molecular Weight (calculated)

61497.6 Da

IEP (calculated)

8.764

GRAVY (calculated)

-0.728

Length

555 amino acids

Sequence
(BLAST)

001: MAGEKIIEKP EAVAPGLKSD PSNKLIEKDL VSKKDGKAAD SVASLGAVTS IKCENDQPPA AEQGYNGTYN QLDEQAYFNA GVQSDNGSLL YYMPGYNPYS
101: AGFVGGDGKQ PYPSSGYLQQ PVSYGSDSMP CYTWGSPYCA DITNSAAPKS GNVKSTFGRN GSVKSNGFNS TKTNSSFSSK NSTVLFNPKS RPATAMSNPP
201: KSFHQAQPFN PVNKFQSDVQ SGGLMKGFHL VGDYPSYTSQ NQGFFMPYDP INCQTNSRMW NGNYRAKPRG NFTRNGVFEA TNELPRGPRA NGRSVPSKPS
301: AEEDQLVPAV QREKYNKEDF KTQYDNAKFY IIKSYSEDDI HKCVKYDVWS STPNGNKKLD TAFVESEAKA SGTGSSCPVF LFFSVNGSGQ FLGVAEMVGQ
401: VDFNRNMDFW QLDKWSGFFP LKWHIVKDVP NTQFRHIILE NNDNRPVTYS RDTQEIGLKE GLEMLNILKN YSEKTSILDD FNFYEKREKV LKAKRSSKPV
501: IQADAYEKAD SLKQFKGGDK VLEEELKTNS TDPTAPLVSL TKNLSINSRP FKSSV

Best Arabidopsis Sequence Match ( AT1G09810.1 )
(BLAST)

001: MATEKNTLDS EATFAQTVPA LDSTTKKQDE SPPKSTPSLT VTACANGSDV VSSQPNDNGQ AHTTDFRKGN HRDKNSSDVY ADSTLRGDRP KGSNCLSQTS
101: FSAPKPLGNF NGAGRLPPNT QAHAFRPPFK GKEAAGQFLT FSNQKTSCVP YSGYINGNSN NGFWDQRDHN KKPERNGESD YLVELKCGPR ANAKTRPPSE
201: SSPLKQNNSF ALALRREMYN LPDFQTDYED AKFFVIKSYS EDDVHKSIKY SVWSSTINGN KKLDAAFRDA ETKTLEDGKK RPIFLFFSVN ASRQFVGLAE
301: MVGYVDFNKD LDFWQVDKWS GFFPVEWHVV KDIPNWELRH IILDNNEDKP VTHTRDTHEI KLKEGLQMLS IFKKYSAVTF LLDDMDFYEE REKSLRAKKE
401: HKPATLRMDL FKEKDYDYEM EGNRRMNHQE RGYNWNRSSN SKTQASLVNQ TKYLSIRGYS GYKKNTGNST

Arabidopsis Description

ECT11Evolutionarily conserved C-terminal region 11 [Source:UniProtKB/TrEMBL;Acc:Q56XH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.