Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G386600.2 | Wheat | nucleus | 98.64 | 98.49 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 98.49 | 98.49 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 94.86 | 94.44 |
| EER93461 | Sorghum | nucleus | 79.15 | 79.51 |
| Zm00001d034005_P003 | Maize | plasma membrane | 77.49 | 77.73 |
| Os03t0748000-01 | Rice | plasma membrane | 77.49 | 77.61 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 54.53 | 51.21 |
| CDY57677 | Canola | mitochondrion | 13.14 | 50.88 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 25.23 | 50.45 |
| KRH43005 | Soybean | nucleus | 52.11 | 48.8 |
| KRH59123 | Soybean | nucleus | 51.81 | 48.45 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 48.04 | 48.11 |
| Solyc01g028860.2.1 | Tomato | nucleus | 50.0 | 46.88 |
| CDY69959 | Canola | nucleus | 27.95 | 46.37 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 50.45 | 46.2 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 51.21 | 46.06 |
| CDY50867 | Canola | nucleus | 27.79 | 46.0 |
| CDY42891 | Canola | nucleus | 27.79 | 46.0 |
| Bra004105.1-P | Field mustard | nucleus | 27.49 | 45.96 |
| AT1G55500.5 | Thale cress | cytosol | 41.99 | 45.95 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 47.89 | 45.68 |
| CDY21154 | Canola | nucleus | 27.95 | 45.45 |
| CDY07437 | Canola | nucleus | 28.85 | 45.37 |
| Bra036423.1-P | Field mustard | nucleus | 27.64 | 45.07 |
| Bra031960.1-P | Field mustard | nucleus | 26.89 | 44.95 |
| CDY39299 | Canola | nucleus | 28.7 | 44.92 |
| CDY50448 | Canola | cytosol | 17.22 | 44.71 |
| CDY29972 | Canola | nucleus | 27.64 | 44.63 |
| CDY24182 | Canola | nucleus | 36.4 | 44.55 |
| CDX82538 | Canola | nucleus | 43.05 | 44.53 |
| Bra008509.1-P | Field mustard | cytosol | 28.4 | 44.44 |
| Bra001506.1-P | Field mustard | nucleus | 42.75 | 44.29 |
| CDX75712 | Canola | nucleus | 42.3 | 44.16 |
| CDY43989 | Canola | nucleus | 41.99 | 43.85 |
| CDY23602 | Canola | nucleus | 41.24 | 43.75 |
| CDY52966 | Canola | cytosol | 29.61 | 43.75 |
| AT3G03950.3 | Thale cress | cytosol | 28.25 | 43.69 |
| Bra027432.1-P | Field mustard | nucleus | 41.84 | 43.69 |
| CDX91541 | Canola | mitochondrion | 10.73 | 43.56 |
| AT3G13460.1 | Thale cress | cytosol | 43.81 | 43.48 |
| CDY56132 | Canola | nucleus | 29.31 | 43.4 |
| CDY07089 | Canola | nucleus | 41.69 | 43.4 |
| Bra039400.1-P | Field mustard | nucleus | 41.09 | 42.77 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 37.61 | 42.35 |
| AT5G61020.1 | Thale cress | cytosol | 30.51 | 40.81 |
| KRG94807 | Soybean | nucleus | 40.03 | 40.21 |
| KRH70155 | Soybean | nucleus | 37.46 | 39.37 |
| KRH06717 | Soybean | nucleus | 38.97 | 38.91 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 37.46 | 38.63 |
| Bra018951.1-P | Field mustard | cytosol | 14.95 | 38.22 |
| Bra014253.1-P | Field mustard | cytosol | 16.77 | 37.25 |
| Bra038524.1-P | Field mustard | cytosol | 12.39 | 36.44 |
| TraesCS1D01G045100.1 | Wheat | nucleus | 31.42 | 32.4 |
| TraesCS7D01G276800.4 | Wheat | nucleus | 30.51 | 32.32 |
| TraesCS7D01G285000.1 | Wheat | endoplasmic reticulum | 27.95 | 30.23 |
| TraesCS3D01G267900.1 | Wheat | nucleus | 29.0 | 27.91 |
| TraesCS4D01G180500.5 | Wheat | cytosol, nucleus, plastid | 28.25 | 26.23 |
| TraesCS2D01G012200.1 | Wheat | cytosol | 26.74 | 24.93 |
| TraesCS3D01G199400.2 | Wheat | cytosol | 23.57 | 22.67 |
| TraesCS1D01G109300.1 | Wheat | cytosol | 20.69 | 19.41 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G396400.3 | EnsemblPlantsGene:TraesCS5D01G396400 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF38 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:464018515..464022128
Molecular Weight (calculated)
71696.3 Da
IEP (calculated)
8.799
GRAVY (calculated)
-0.837
Length
662 amino acids
Sequence
(BLAST)
(BLAST)
001: MVYGSANAGN AQGAGLHVDM QKLSLEGKKD AAGADAAKPS GMQYGSANTG NSQTVEPHVD RSITPLLQEA MDPNFFYQPN GYPSPAYYYP SGYDGSTNEW
101: DTRYAGHEGM EVPQQSVYGD MYHGYGYAPY GPYPSGSPVP TVGHDGQSYG TQQYQYPGQY YQQPAPTNAM HGVNSANPQS ELPSAAAHQA RATVVSAKVT
201: TGTASGIANA ASSLPRKQTH HHVSVTNSGS YGRGPSQGGP SASNFGHTGH RSPAQWYDGP VYSNGHQRSI ASSTSYGSNS SSAKNQSHRP TTNLMGMHTH
301: GPSSGMGLTS PSYSSRMYPD SRLYGQYGQY GNTLKAGLGF GSNVYNSRNN GQWGVVDTVK YKPRNRATFG FGSENQDGFT ELNRGPRSGG FRHQKPFGPT
401: VTIAVKGQVL PSAGKQDNSV LPDKSQFNQE GFSATYKDAK FFVIKSYSED DVHKSIKYNV WASTPNGNKK LDAGYREAQE KSSECPVFLF FSVNTSGQFV
501: GVAEMVGPVD FDKTVDYWQQ DKWNGCFSIK WHIVKDIPNN ILKHITLDNN DNKPVTNSRD TQEVKLEQGL QMLKIFKEHV SKTSILDDFA FYENRQKLMQ
601: EKRAKQQPLQ GQGVDEKEKS AVNGNSAAQK QTPSKESTTP AAGEEPNASK PTTAESGGAS AN
101: DTRYAGHEGM EVPQQSVYGD MYHGYGYAPY GPYPSGSPVP TVGHDGQSYG TQQYQYPGQY YQQPAPTNAM HGVNSANPQS ELPSAAAHQA RATVVSAKVT
201: TGTASGIANA ASSLPRKQTH HHVSVTNSGS YGRGPSQGGP SASNFGHTGH RSPAQWYDGP VYSNGHQRSI ASSTSYGSNS SSAKNQSHRP TTNLMGMHTH
301: GPSSGMGLTS PSYSSRMYPD SRLYGQYGQY GNTLKAGLGF GSNVYNSRNN GQWGVVDTVK YKPRNRATFG FGSENQDGFT ELNRGPRSGG FRHQKPFGPT
401: VTIAVKGQVL PSAGKQDNSV LPDKSQFNQE GFSATYKDAK FFVIKSYSED DVHKSIKYNV WASTPNGNKK LDAGYREAQE KSSECPVFLF FSVNTSGQFV
501: GVAEMVGPVD FDKTVDYWQQ DKWNGCFSIK WHIVKDIPNN ILKHITLDNN DNKPVTNSRD TQEVKLEQGL QMLKIFKEHV SKTSILDDFA FYENRQKLMQ
601: EKRAKQQPLQ GQGVDEKEKS AVNGNSAAQK QTPSKESTTP AAGEEPNASK PTTAESGGAS AN
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.