Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d006944_P001 | |
| Zm00001d022272_P002 | |
| Zm00001d024762_P001 | |
| Zm00001d040567_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93461 | Sorghum | nucleus | 94.09 | 94.23 |
| Os03t0748000-01 | Rice | plasma membrane | 78.18 | 78.06 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 77.73 | 77.49 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 77.42 | 77.19 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 77.27 | 76.92 |
| Zm00001d002008_P001 | Maize | cytosol | 8.48 | 76.71 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 77.12 | 76.54 |
| CDY57677 | Canola | mitochondrion | 13.64 | 52.63 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 55.3 | 51.77 |
| KRH43005 | Soybean | nucleus | 54.39 | 50.78 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 25.3 | 50.45 |
| KRH59123 | Soybean | nucleus | 53.79 | 50.14 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 49.24 | 49.17 |
| Solyc01g028860.2.1 | Tomato | nucleus | 51.82 | 48.44 |
| CDY50448 | Canola | cytosol | 18.33 | 47.45 |
| AT1G55500.5 | Thale cress | cytosol | 43.33 | 47.27 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 49.39 | 46.97 |
| CDY21154 | Canola | nucleus | 28.94 | 46.93 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 52.27 | 46.88 |
| CDY69959 | Canola | nucleus | 28.18 | 46.62 |
| Bra036423.1-P | Field mustard | nucleus | 28.64 | 46.55 |
| CDY50867 | Canola | nucleus | 28.18 | 46.5 |
| CDY42891 | Canola | nucleus | 28.18 | 46.5 |
| CDY29972 | Canola | nucleus | 28.64 | 46.1 |
| CDX91541 | Canola | mitochondrion | 11.36 | 46.01 |
| Bra031960.1-P | Field mustard | nucleus | 27.58 | 45.96 |
| Bra004105.1-P | Field mustard | nucleus | 27.42 | 45.71 |
| CDY07437 | Canola | nucleus | 29.09 | 45.61 |
| AT3G13460.1 | Thale cress | cytosol | 45.76 | 45.28 |
| CDY39299 | Canola | nucleus | 28.94 | 45.15 |
| CDY24182 | Canola | nucleus | 36.97 | 45.1 |
| Bra001506.1-P | Field mustard | nucleus | 43.48 | 44.91 |
| CDX82538 | Canola | nucleus | 43.48 | 44.84 |
| CDX75712 | Canola | nucleus | 43.03 | 44.8 |
| Zm00001d048424_P003 | Maize | plastid | 50.0 | 44.59 |
| CDY23602 | Canola | nucleus | 42.12 | 44.55 |
| CDY43989 | Canola | nucleus | 42.73 | 44.48 |
| Bra027432.1-P | Field mustard | nucleus | 42.58 | 44.32 |
| CDY07089 | Canola | nucleus | 42.27 | 43.87 |
| Bra008509.1-P | Field mustard | cytosol | 28.03 | 43.74 |
| AT3G03950.3 | Thale cress | cytosol | 28.33 | 43.69 |
| Bra039400.1-P | Field mustard | nucleus | 41.82 | 43.4 |
| CDY56132 | Canola | nucleus | 29.24 | 43.18 |
| CDY52966 | Canola | cytosol | 29.24 | 43.08 |
| Zm00001d027731_P012 | Maize | plastid | 50.76 | 41.72 |
| AT5G61020.1 | Thale cress | cytosol | 29.85 | 39.8 |
| KRG94807 | Soybean | nucleus | 38.94 | 39.0 |
| KRH70155 | Soybean | nucleus | 36.82 | 38.57 |
| KRH06717 | Soybean | nucleus | 38.64 | 38.46 |
| Bra018951.1-P | Field mustard | cytosol | 14.85 | 37.84 |
| Bra014253.1-P | Field mustard | cytosol | 16.67 | 36.91 |
| Bra038524.1-P | Field mustard | cytosol | 12.42 | 36.44 |
| Zm00001d007890_P002 | Maize | mitochondrion | 35.91 | 36.29 |
| Zm00001d018896_P002 | Maize | mitochondrion | 37.88 | 35.41 |
| Zm00001d008913_P001 | Maize | cytosol, nucleus, peroxisome | 21.36 | 35.34 |
| Zm00001d024339_P001 | Maize | extracellular | 30.0 | 33.45 |
| Zm00001d002372_P002 | Maize | nucleus | 27.88 | 33.33 |
| Zm00001d049360_P004 | Maize | extracellular | 29.7 | 32.89 |
| Zm00001d011602_P001 | Maize | nucleus | 29.24 | 31.69 |
| Zm00001d031981_P002 | Maize | cytosol | 30.0 | 30.41 |
| Zm00001d047072_P001 | Maize | mitochondrion | 22.27 | 30.06 |
| Zm00001d043860_P001 | Maize | mitochondrion | 28.03 | 27.41 |
| Zm00001d038120_P001 | Maize | cytosol | 9.24 | 26.18 |
| Zm00001d032562_P001 | Maize | cytosol | 10.15 | 24.19 |
| Zm00001d051781_P001 | Maize | cytosol, extracellular | 9.09 | 23.9 |
| Zm00001d048501_P002 | Maize | cytosol | 25.91 | 22.56 |
| Zm00001d034996_P005 | Maize | cytosol | 23.48 | 22.53 |
| Zm00001d049729_P008 | Maize | cytosol | 23.79 | 21.81 |
| Zm00001d010826_P001 | Maize | cytosol | 12.42 | 19.81 |
Protein Annotations
| EMBL:BT066055 | EnsemblPlants:Zm00001d034005_P003 | EnsemblPlants:Zm00001d034005_T003 | EnsemblPlantsGene:Zm00001d034005 | EntrezGene:100383052 | Gene3D:3.10.590.10 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain |
| PANTHER:PTHR12357 | PANTHER:PTHR12357:SF38 | PFAM:PF04146 | PFscan:PS50882 | ProteinID:ONM09215.1 | SEG:seg |
| UniParc:UPI000194B31C | UniProt:C0PCN6 | MapMan:16.5.2.1 | : | : | : |
Description
evolutionarily conserved C-terminal region 2
Coordinates
chr1:+:280996704..281000740
Molecular Weight (calculated)
71893.0 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.834
Length
660 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTVAPAPSA ADQTTNLLQK LSLEGKDGSD TAKKPSGMPY GGSTHAGDAQ SAASQVDRSI TPLLQEAMDP NFFYQPSAYA SPAYYFPSGY DGSANEWDSR
101: YAGHEGMEMP PQTVYGDMYL GYGYAPYGPY PSGSPVPTVG HDGQSYGSQQ YQYPSQYYQQ PTPTNAKHGL NGASSQPEPP SVASQQARVL VDATKATPNV
201: RANGMTIAHN SSLPRKQTHL NVSVANSGLY GRGPMQGSGP SASNYGHNGV RSPAQWYDGP VYSNGHQIPT ASSTSYRSNS SSMRSQSQHP TTNLMGIHAQ
301: MPSSGMGLTS PRYPSRMYPD NRLYGQYGQY GNTLKGGLGF GSNMYSSRNN GRWGVVDTKY KPRGRAPFGF SGENQDGFTE LNRGPRSGGF KHQKQFGPTV
401: TIAVKGQALP SVGKQNSTLP DKGQFNQEGF PLTYKDAKFF VIKSYSEDDV HKSIKYNVWA STPNGNKKLD AGYREAQEKS SDCPVFLFFS VNTSGQFVGV
501: AEMVGPVDFD KTVEYWQQDK WNGCFPLKWH IVKDVPNNTL KHITLDNNDN KPVTNSRDTQ EVKLEQGLEM LKIFKEHVTK TSILDDFGFY ENRQKLMQEK
601: RANQQLLQGQ GADVSQEKDK DATNGKPGSQ KQATSKEGTP AEVAADASKP VAESGISNDN
101: YAGHEGMEMP PQTVYGDMYL GYGYAPYGPY PSGSPVPTVG HDGQSYGSQQ YQYPSQYYQQ PTPTNAKHGL NGASSQPEPP SVASQQARVL VDATKATPNV
201: RANGMTIAHN SSLPRKQTHL NVSVANSGLY GRGPMQGSGP SASNYGHNGV RSPAQWYDGP VYSNGHQIPT ASSTSYRSNS SSMRSQSQHP TTNLMGIHAQ
301: MPSSGMGLTS PRYPSRMYPD NRLYGQYGQY GNTLKGGLGF GSNMYSSRNN GRWGVVDTKY KPRGRAPFGF SGENQDGFTE LNRGPRSGGF KHQKQFGPTV
401: TIAVKGQALP SVGKQNSTLP DKGQFNQEGF PLTYKDAKFF VIKSYSEDDV HKSIKYNVWA STPNGNKKLD AGYREAQEKS SDCPVFLFFS VNTSGQFVGV
501: AEMVGPVDFD KTVEYWQQDK WNGCFPLKWH IVKDVPNNTL KHITLDNNDN KPVTNSRDTQ EVKLEQGLEM LKIFKEHVTK TSILDDFGFY ENRQKLMQEK
601: RANQQLLQGQ GADVSQEKDK DATNGKPGSQ KQATSKEGTP AEVAADASKP VAESGISNDN
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGYGYAAFP YSPATSPAPQ LGGDGQLYGA QQYQYPFPLT ASSGPFASSV PASTQSKLST NKAANSASAG IPKGMNGSAP VKPLNQSALY GNSALGGGLA
201: AGYQDPRYSY DGFYTPVSWH DGSNFSDVQR SVSGSGVASS YSKANNNVPA TRNQNSSSNS HYTSMYQPAS MTGYAAQGYY DRVSPNKSYG QYGSTVRSGM
301: GYGSSGYGSR TNERGWLNTD NKYRSRGRGN SYFYGNENID GLNELNRGPR AKGTKATEEV SSEEVKKQTF DESNTEETVT CVLPDREECN RDDFPVEYKD
401: AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDAAYQEA QQKSSGCPVF LFFSVNASGQ FIGLAEMKGP VDFNKNIEYW QQDKWTGSFP LKWHILKDVP
501: NSLLKHITLE YNENKPVTNS RDTQEVKLEQ GLKVVKIFKE HNSKTCILDD FSFYEARQKT ILEKKAKQQQ SQKQVWEGKT NDEKPGTVDS TM
101: TSGYGYAAFP YSPATSPAPQ LGGDGQLYGA QQYQYPFPLT ASSGPFASSV PASTQSKLST NKAANSASAG IPKGMNGSAP VKPLNQSALY GNSALGGGLA
201: AGYQDPRYSY DGFYTPVSWH DGSNFSDVQR SVSGSGVASS YSKANNNVPA TRNQNSSSNS HYTSMYQPAS MTGYAAQGYY DRVSPNKSYG QYGSTVRSGM
301: GYGSSGYGSR TNERGWLNTD NKYRSRGRGN SYFYGNENID GLNELNRGPR AKGTKATEEV SSEEVKKQTF DESNTEETVT CVLPDREECN RDDFPVEYKD
401: AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDAAYQEA QQKSSGCPVF LFFSVNASGQ FIGLAEMKGP VDFNKNIEYW QQDKWTGSFP LKWHILKDVP
501: NSLLKHITLE YNENKPVTNS RDTQEVKLEQ GLKVVKIFKE HNSKTCILDD FSFYEARQKT ILEKKAKQQQ SQKQVWEGKT NDEKPGTVDS TM
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.