Factsheet for GSMUA_Achr7P27220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P25010_001
GSMUA_Achr3P13480_001
GSMUA_Achr8P10920_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	GSMUA_Achr11P...	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr11P...	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr1P25010_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr3P13480_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr8P10920_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_AchrUn_...	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01490_001	Banana	nucleus	49.92	58.93
GSMUA_Achr4P22630_001	Banana	nucleus	52.8	56.2
VIT_06s0004g00200.t01	Wine grape	nucleus	58.09	54.47
GSMUA_Achr4P21380_001	Banana	nucleus	53.71	53.95
GSMUA_Achr4P14820_001	Banana	cytosol	26.48	52.87
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	48.56	52.2
GSMUA_Achr5P02830_001	Banana	cytosol	48.56	52.11
VIT_08s0007g07450.t01	Wine grape	cytosol	54.31	51.73
KRH59123	Soybean	nucleus	55.37	51.69
KRH43005	Soybean	nucleus	55.22	51.63
Solyc01g028860.2.1	Tomato	nucleus	54.01	50.57
CDY57677	Canola	mitochondrion	13.01	50.29
EER93461	Sorghum	nucleus	49.62	49.77
Zm00001d034005_P003	Maize	plasma membrane	49.17	49.24
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	54.16	48.64
AT1G55500.5	Thale cress	cytosol	44.48	48.59
CDX82538	Canola	nucleus	46.9	48.44
CDY23602	Canola	nucleus	45.69	48.4
TraesCS5A01G386600.2	Wheat	nucleus	48.41	48.27
CDY43989	Canola	nucleus	46.29	48.27
Os03t0748000-01	Rice	plasma membrane	48.26	48.26
TraesCS5B01G391500.1	Wheat	nucleus	48.26	48.19
Bra001506.1-P	Field mustard	nucleus	46.44	48.04
TraesCS5D01G396400.3	Wheat	nucleus	48.11	48.04
Bra027432.1-P	Field mustard	nucleus	45.99	47.95
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	48.11	47.82
CDX75712	Canola	nucleus	45.69	47.63
Os03t0158500-01	Rice	nucleus	50.83	47.52
CDY24182	Canola	nucleus	38.88	47.5
CDY07089	Canola	nucleus	45.69	47.48
Bra039400.1-P	Field mustard	nucleus	45.08	46.86
KXG40139	Sorghum	plastid	50.23	46.69
AT3G13460.1	Thale cress	cytosol	46.9	46.48
CDY69959	Canola	nucleus	27.69	45.86
TraesCS4D01G273200.4	Wheat	cytosol	49.77	45.5
CDY50867	Canola	nucleus	27.53	45.5
CDY42891	Canola	nucleus	27.53	45.5
Bra031960.1-P	Field mustard	nucleus	26.93	44.95
TraesCS4A01G031600.2	Wheat	cytosol	49.47	44.86
Bra008509.1-P	Field mustard	cytosol	28.59	44.68
CDY21154	Canola	nucleus	27.38	44.47
Bra004105.1-P	Field mustard	nucleus	26.48	44.19
Bra036423.1-P	Field mustard	nucleus	27.08	44.09
CDY56132	Canola	nucleus	29.8	44.07
CDY52966	Canola	cytosol	29.8	43.97
CDY39299	Canola	nucleus	28.14	43.97
CDY07437	Canola	nucleus	27.84	43.71
HORVU4Hr1G072940.4	Barley	cytosol	49.02	43.67
CDY29972	Canola	nucleus	26.78	43.17
TraesCS4B01G274500.2	Wheat	plastid	49.92	43.02
Zm00001d048424_P003	Maize	plastid	47.96	42.84
KRG94807	Soybean	nucleus	42.66	42.79
CDY50448	Canola	cytosol	16.49	42.75
CDX91541	Canola	mitochondrion	10.44	42.33
AT3G03950.3	Thale cress	cytosol	27.38	42.29
KRH06717	Soybean	nucleus	41.75	41.63
AT5G61020.1	Thale cress	cytosol	30.86	41.21
Zm00001d027731_P012	Maize	plastid	49.47	40.72
KRH70155	Soybean	nucleus	37.82	39.68
GSMUA_Achr1P10560_001	Banana	nucleus	25.57	37.98
GSMUA_Achr6P12810_001	Banana	nucleus	19.82	37.22
Bra018951.1-P	Field mustard	cytosol	14.07	35.91
Bra014253.1-P	Field mustard	cytosol	15.73	34.9
Bra038524.1-P	Field mustard	cytosol	11.65	34.22
GSMUA_Achr4P12480_001	Banana	cytosol	29.35	33.39
GSMUA_Achr4P11560_001	Banana	nucleus	32.07	32.67
GSMUA_Achr6P26690_001	Banana	cytosol	29.35	31.86
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	29.65	31.66
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	32.07	27.5
GSMUA_Achr1P24980_001	Banana	nucleus	30.11	23.98
GSMUA_Achr8P29890_001	Banana	cytosol	27.69	22.56

Protein Annotations

EnsemblPlants:GSMUA_Achr7P27220_001	EnsemblPlants:GSMUA_Achr7T27220_001	EnsemblPlantsGene:GSMUA_Achr7G27220_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF63
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI000296B23B	UniProt:M0TL58	MapMan:16.5.2.1

Description

YT521-B-like family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G27220_001]

Coordinates

chr7:+:28319681..28323439

Molecular Weight (calculated)

72240.4 Da

IEP (calculated)

6.997

GRAVY (calculated)

-0.776

Length

661 amino acids

Sequence
(BLAST)

001: MTEASDLLQK LSLDSPPKTD NAVEVAKEPP ALQNGSSDCE TPNMPIQSER SLTPLLPDFV DPSMCYVPGG YASPAYFYGG YDRAVNKWGD YSRYTNNDGV
101: EILPGVYGDL YQGYGYAPYS AYPSNGSSVP TMGHDGQHYG PQQYQYPVPF FEQPTPTSTT QTPTPPTSQG EVSTSVAANQ PSISMDTARV DSSKVSNVNA
201: NRNNGPGTMR SSHQPSSLTS GDSHGKGGFP GGFHSAGYQD SRFGFGGQHK PATSSSRSST VTHKANNLSE RNQNQHSVPH IVGKNAPVSR MYPINRFYGG
301: NGLGNVFGYG FNGYDHRMNG RWGPPLDSKY NPRGRGNGFF GYGNEIQDGF SELNRGPRAG RSKNQKAAGT APVFDLKGQN LSSIGNENSS VTLDREQYNG
401: DDFPDKHSDA RFFVIKSYSE DDIHKSIKYN VWTSTPNGNK KLDGGYQEAQ EKDGGCPVFL FYSVNASGQF VGVAEMVGPV DFNKTVDYWQ QDKWIGCFPV
501: KWHIIKDVPN SLLKHITLEN NDNKPVTNSR DTQEVRLEQG LQMLKIFKEH VSKTSVLDDF DFYENRQNFM QEKRVKQQLQ KQVWTGKASH APKEDEQDRT
601: NGKPGSQPVS VLNKESAQGS LGEINTPVEL GVAAAAGAPL KVLKPAVEKH VVANGVANGV A

Best Arabidopsis Sequence Match ( AT3G13460.2 )
(BLAST)

001: MATVAPPADH LLQKLSLDSP AKASEIPEPN KKTAVYQYGG VDVHGQVPSY DRSLTPMLPS DAADPSVCYV PNPYNPYQYY NVYGSGQEWT DYPAYTNPEG
101: VDMNSGIYGE NGTVVYPQGY GYAAYPYSPA TSPAPQLGGE GQLYGAQQYQ YPNYFPNSGP YASSVATPTQ PDLSANKPAG VKTLPADSNN VASAAGITKG
201: SNGSAPVKPT NQATLNTSSN LYGMGAPGGG LAAGYQDPRY AYEGYYAPVP WHDGSKYSDV QRPVSGSGVA SSYSKSSTVP SSRNQNYRSN SHYTSVHQPS
301: SVTGYGTAQG YYNRMYQNKL YGQYGSTGRS ALGYGSSGYD SRTNGRGWAA TDNKYRSWGR GNSYYYGNEN NVDGLNELNR GPRAKGTKNQ KGNLDDSLEV
401: KEQTGESNVT EVGEADNTCV VPDREQYNKE DFPVDYANAM FFIIKSYSED DVHKSIKYNV WASTPNGNKK LAAAYQEAQQ KAGGCPIFLF FSVNASGQFV
501: GLAEMTGPVD FNTNVEYWQQ DKWTGSFPLK WHIVKDVPNS LLKHITLENN ENKPVTNSRD TQEVKLEQGL KIVKIFKEHS SKTCILDDFS FYEVRQKTIL
601: EKKAKQTQKQ VSEEKVTDEK KESATAESAS KESPAAVQTS SDVKVAENGS VAKPVTGDVV ANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.