Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G031600.2 | Wheat | cytosol | 97.79 | 96.98 |
| TraesCS4B01G274500.2 | Wheat | plastid | 97.1 | 91.53 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 93.5 | 91.11 |
| Os03t0158500-01 | Rice | nucleus | 75.52 | 77.23 |
| KXG40139 | Sorghum | plastid | 71.37 | 72.57 |
| Zm00001d048424_P003 | Maize | plastid | 68.19 | 66.62 |
| Zm00001d027731_P012 | Maize | plastid | 71.23 | 64.13 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 46.2 | 50.45 |
| KRH43005 | Soybean | nucleus | 48.82 | 49.93 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 45.5 | 49.77 |
| CDY57677 | Canola | mitochondrion | 11.76 | 49.71 |
| KRH59123 | Soybean | nucleus | 48.27 | 49.29 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 46.06 | 47.98 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 46.75 | 47.94 |
| CDY23602 | Canola | nucleus | 41.22 | 47.76 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 21.58 | 47.13 |
| Solyc01g028860.2.1 | Tomato | nucleus | 45.78 | 46.88 |
| CDY43989 | Canola | nucleus | 40.94 | 46.69 |
| Bra027432.1-P | Field mustard | nucleus | 40.8 | 46.53 |
| AT1G55500.5 | Thale cress | cytosol | 38.73 | 46.28 |
| CDY50448 | Canola | cytosol | 16.32 | 46.27 |
| CDX82538 | Canola | nucleus | 40.66 | 45.94 |
| Bra001506.1-P | Field mustard | nucleus | 40.25 | 45.54 |
| Bra004105.1-P | Field mustard | nucleus | 24.9 | 45.45 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 46.06 | 45.24 |
| Bra039400.1-P | Field mustard | nucleus | 39.56 | 44.97 |
| CDX75712 | Canola | nucleus | 39.42 | 44.95 |
| AT3G13460.1 | Thale cress | cytosol | 41.36 | 44.83 |
| CDY07089 | Canola | nucleus | 39.14 | 44.5 |
| Bra008509.1-P | Field mustard | cytosol | 26.0 | 44.44 |
| CDX91541 | Canola | mitochondrion | 9.96 | 44.17 |
| CDY24182 | Canola | nucleus | 32.78 | 43.81 |
| CDY50867 | Canola | nucleus | 24.2 | 43.75 |
| CDY42891 | Canola | nucleus | 24.2 | 43.75 |
| CDY69959 | Canola | nucleus | 24.07 | 43.61 |
| CDY07437 | Canola | nucleus | 25.17 | 43.23 |
| CDY21154 | Canola | nucleus | 24.2 | 43.0 |
| Bra031960.1-P | Field mustard | nucleus | 23.37 | 42.68 |
| Bra036423.1-P | Field mustard | nucleus | 23.93 | 42.61 |
| CDY39299 | Canola | nucleus | 24.9 | 42.55 |
| CDY56132 | Canola | nucleus | 26.14 | 42.28 |
| CDY29972 | Canola | nucleus | 23.93 | 42.2 |
| CDY52966 | Canola | cytosol | 26.0 | 41.96 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 34.02 | 41.84 |
| AT3G03950.3 | Thale cress | cytosol | 24.48 | 41.36 |
| AT5G61020.1 | Thale cress | cytosol | 27.25 | 39.8 |
| KRG94807 | Soybean | nucleus | 36.1 | 39.61 |
| KRH06717 | Soybean | nucleus | 35.27 | 38.46 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 33.89 | 38.16 |
| KRH70155 | Soybean | nucleus | 32.09 | 36.83 |
| Bra018951.1-P | Field mustard | cytosol | 12.72 | 35.52 |
| Bra014253.1-P | Field mustard | cytosol | 14.52 | 35.23 |
| Bra038524.1-P | Field mustard | cytosol | 10.93 | 35.11 |
| TraesCS7D01G276800.4 | Wheat | nucleus | 29.18 | 33.76 |
| TraesCS1D01G045100.1 | Wheat | nucleus | 29.05 | 32.71 |
| TraesCS7D01G285000.1 | Wheat | endoplasmic reticulum | 25.03 | 29.58 |
| TraesCS3D01G267900.1 | Wheat | nucleus | 26.97 | 28.34 |
| TraesCS4D01G180500.5 | Wheat | cytosol, nucleus, plastid | 25.59 | 25.95 |
| TraesCS3D01G199400.2 | Wheat | cytosol | 22.55 | 23.69 |
| TraesCS2D01G012200.1 | Wheat | cytosol | 23.24 | 23.66 |
| TraesCS1D01G109300.1 | Wheat | cytosol | 18.81 | 19.26 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G273200.4 | EnsemblPlantsGene:TraesCS4D01G273200 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF30 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:442904448..442907867
Molecular Weight (calculated)
78066.6 Da
IEP (calculated)
8.633
GRAVY (calculated)
-0.753
Length
723 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLESQPQPK AAADGTELAG ATKQGPVASQ PLSVSIPQDR SITPVVQDFT DPNMFYLPAY YYGELGLPGY DGTMSEWDEY TRYVNQDGVE VTPAVYGDIY
101: GYGYAPYGAY SPASSPVPTV DGQMFAAQHY QYPAYYQPPT PISSTTQGDQ QHSANADNKP AAKADAAKTT TNVVPNGTAQ SNSGTAPLGS SYQNSSLTPD
201: GTYRAPLIGG VPSTGYVDST YGYDTTGAHY AWYDGSAYTN AQQRPTTANY TPSSAYNSNG SSARYQTKSP TPQQTGNRRP TTTTGSATPT YPNRMYSSTQ
301: SYNQYGNSVK TGLMYGNTGY GSTGYGSTGY GSSGYGGSGY GSNGYDSRLY GRWGVSMDSR YNRPRGRGNG YYGFGNESQD GTIELNRGPR SGRFKNQKAF
401: GHTVTIAVKG QTLPSSENKN ASDVPDKAQF NLEDFPVQYD DAKFFVIKSY SEDDIHKSIK YNVWASTTNG NKKLDAAYQE AQAKGSSCPI FLFFSVNTSG
501: QFVGVAEMTG PVDFEKTLEY WQQDKWNGSF SVKWHIVKDV PNNILKHIVL ENNEGKPVTN SRDTQDINLE QGIQMLKIFK EHVSKTSILE DFAFYENRQK
601: LMQEKRIKQQ QIQKQVWDSR APNPVAGEKQ QEVANGKPKV SVPNGVSGEK QQDAVNGKPK SPVANGVNGD AKVPAEKAAA TAAPPAVTYA AKVAQTAAAE
701: KKPAATEKKP VVANGAVKTG VAA
101: GYGYAPYGAY SPASSPVPTV DGQMFAAQHY QYPAYYQPPT PISSTTQGDQ QHSANADNKP AAKADAAKTT TNVVPNGTAQ SNSGTAPLGS SYQNSSLTPD
201: GTYRAPLIGG VPSTGYVDST YGYDTTGAHY AWYDGSAYTN AQQRPTTANY TPSSAYNSNG SSARYQTKSP TPQQTGNRRP TTTTGSATPT YPNRMYSSTQ
301: SYNQYGNSVK TGLMYGNTGY GSTGYGSTGY GSSGYGGSGY GSNGYDSRLY GRWGVSMDSR YNRPRGRGNG YYGFGNESQD GTIELNRGPR SGRFKNQKAF
401: GHTVTIAVKG QTLPSSENKN ASDVPDKAQF NLEDFPVQYD DAKFFVIKSY SEDDIHKSIK YNVWASTTNG NKKLDAAYQE AQAKGSSCPI FLFFSVNTSG
501: QFVGVAEMTG PVDFEKTLEY WQQDKWNGSF SVKWHIVKDV PNNILKHIVL ENNEGKPVTN SRDTQDINLE QGIQMLKIFK EHVSKTSILE DFAFYENRQK
601: LMQEKRIKQQ QIQKQVWDSR APNPVAGEKQ QEVANGKPKV SVPNGVSGEK QQDAVNGKPK SPVANGVNGD AKVPAEKAAA TAAPPAVTYA AKVAQTAAAE
701: KKPAATEKKP VVANGAVKTG VAA
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQVWE GKTNDEKPGT
601: VDSTM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQVWE GKTNDEKPGT
601: VDSTM
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.