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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plasma membrane 1
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001665.1-P
Bra022219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13460.1 Bra001665.1-P AT3G17510.1 16113215
AT3G13460.1 Bra022219.1-P AT3G17510.1 16113215
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43989 Canola nucleus 98.58 98.58
CDY23602 Canola nucleus 93.85 95.35
Bra001506.1-P Field mustard nucleus 84.7 84.04
Bra039400.1-P Field mustard nucleus 82.02 81.76
AT3G13460.1 Thale cress cytosol 83.28 79.16
VIT_06s0004g00200.t01 Wine grape nucleus 59.46 53.48
KRH43005 Soybean nucleus 59.31 53.18
KRH59123 Soybean nucleus 58.52 52.4
Bra004105.1-P Field mustard nucleus 32.02 51.26
Solyc01g028860.2.1 Tomato nucleus 55.68 50.0
Bra031960.1-P Field mustard nucleus 30.44 48.74
Bra008509.1-P Field mustard cytosol 32.33 48.46
PGSC0003DMT400061684 Potato endoplasmic reticulum, plasma membrane 55.36 47.69
GSMUA_Achr7P01490_001 Banana nucleus 41.48 46.96
Bra036423.1-P Field mustard nucleus 29.97 46.8
GSMUA_Achr7P27220_001 Banana cytosol 47.95 45.99
GSMUA_Achr4P22630_001 Banana nucleus 44.64 45.57
GSMUA_Achr4P21380_001 Banana nucleus 47.16 45.44
GSMUA_Achr5P02830_001 Banana cytosol 43.53 44.81
GSMUA_Achr4P28430_001 Banana nucleus, plastid 43.38 44.72
GSMUA_Achr4P14820_001 Banana cytosol 23.34 44.71
EER93461 Sorghum nucleus 45.11 43.4
KXG40139 Sorghum plastid 48.58 43.32
Os03t0748000-01 Rice plasma membrane 44.95 43.12
Os03t0158500-01 Rice nucleus 47.63 42.72
Zm00001d034005_P003 Maize plasma membrane 44.32 42.58
TraesCS5B01G391500.1 Wheat nucleus 44.16 42.3
TraesCS5D01G396400.3 Wheat nucleus 43.69 41.84
HORVU5Hr1G094950.6 Barley cytosol, nucleus 43.69 41.65
TraesCS5A01G386600.2 Wheat nucleus 43.53 41.63
TraesCS4D01G273200.4 Wheat cytosol 46.53 40.8
TraesCS5A01G431200.1 Wheat nucleus 37.7 40.58
TraesCS4A01G031600.2 Wheat cytosol 46.37 40.33
TraesCS5D01G439100.1 Wheat nucleus 37.38 40.31
TraesCS5B01G433000.1 Wheat cytosol 37.54 39.93
HORVU4Hr1G072940.4 Barley cytosol 46.69 39.89
Bra018951.1-P Field mustard cytosol 16.25 39.77
Zm00001d048424_P003 Maize plastid 46.21 39.59
KXG34475 Sorghum cytosol 40.22 39.47
EER93313 Sorghum cytosol 35.49 39.34
Bra038524.1-P Field mustard cytosol 13.88 39.11
Bra014253.1-P Field mustard cytosol 18.3 38.93
Os07t0170300-01 Rice plasma membrane 36.75 38.7
TraesCS4B01G274500.2 Wheat plastid 46.53 38.46
Bra034710.1-P Field mustard nucleus 35.33 37.71
Zm00001d027731_P012 Maize plastid 47.48 37.48
Zm00001d007890_P002 Maize mitochondrion 38.01 36.91
TraesCS5A01G431100.1 Wheat cytosol 37.22 36.76
TraesCS5B01G432900.2 Wheat extracellular 37.22 36.42
Bra035104.1-P Field mustard cytosol 25.39 36.34
TraesCS5D01G439200.1 Wheat cytosol 36.59 36.14
Bra039366.1-P Field mustard nucleus 34.23 36.11
Bra008406.1-P Field mustard cytosol 25.39 35.94
Zm00001d018896_P002 Maize mitochondrion 39.59 35.55
HORVU5Hr1G104380.1 Barley plastid 36.91 35.4
HORVU5Hr1G104390.3 Barley plastid 36.44 33.58
Bra003615.1-P Field mustard nucleus 26.18 32.61
Bra019988.1-P Field mustard nucleus 25.55 32.34
Bra006780.1-P Field mustard cytosol 25.55 31.83
Bra010911.1-P Field mustard nucleus 25.39 30.9
Bra020382.1-P Field mustard nucleus 25.71 29.48
Bra018708.1-P Field mustard nucleus 28.23 29.44
Protein Annotations
EnsemblPlants:Bra027432.1EnsemblPlants:Bra027432.1-PEnsemblPlantsGene:Bra027432Gene3D:3.10.590.10GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR007275InterPro:YTH_domainncoils:CoilPANTHER:PTHR12357
PANTHER:PTHR12357:SF63PFAM:PF04146PFscan:PS50882SEG:segUniParc:UPI000254807CUniProt:M4EF70
MapMan:16.5.2.1:::::
Description
AT3G13460 (E=6e-239) ECT2 | ECT2; protein binding
Coordinates
chrA05:+:20891061..20893623
Molecular Weight (calculated)
68929.7 Da
IEP (calculated)
6.212
GRAVY (calculated)
-0.820
Length
634 amino acids
Sequence
(BLAST)
001: MLQKLSLDPQ AKASEIPEPN KKTAVYQYGG VDSHGQVPTY DRSLTPLLPS DAVDPSVCYV PNAYPQFYYG GYGNGDWSEY TGYQNPEGVD MSSGIYGENG
101: SIVYPQSYGY AAYPYSPATS PGPQVGGDGQ LYGAQQQYQY PAFFPTGAFA SSVATPNQGD LSANKAGGVK TAETKNVASA TGMAKGSNGA VTGKPNNQTT
201: HNTASNLYGN GAPGGGFAGG YGYDGFYAPV PCYDGSKYSD VQRSGSGVAS SYSKATTVPS SRNQNYRSNS HYTPASMTGY GTGQGYYNRV YQNKVYGSYG
301: SSGRSGMSYG SSGYDSRTNG RGWVSTTDNR YRNWGRGNSS FYGNENNADG LNELNRGPRA KGTKNQKENS EDSLEVKEQN VAEAVETENT CIVPDREQYN
401: KEDFPVDYEN AMFFVIKSYS EDDVHKSIKY NVWASTPNGN KKLAAAYQEA QQKPGGCPIF LFFSVNASGQ FVGLAEMTGP VDFNTNVEYW QQDKWTGSFP
501: LKWHIVKDVP NSLLKHITLE NNENKSVTNS RDTQEVKLEQ GLKIVKIFKE HTSKTCILDD FSFYEVRQKT ILEKKAKQQQ SQKQVSEEKT TADEKKETAT
601: ADSAKKESPP ATSDVKADEN GSVAKPVSVV ANGC
Best Arabidopsis Sequence Match ( AT3G13460.2 )
(BLAST)
001: MATVAPPADH LLQKLSLDSP AKASEIPEPN KKTAVYQYGG VDVHGQVPSY DRSLTPMLPS DAADPSVCYV PNPYNPYQYY NVYGSGQEWT DYPAYTNPEG
101: VDMNSGIYGE NGTVVYPQGY GYAAYPYSPA TSPAPQLGGE GQLYGAQQYQ YPNYFPNSGP YASSVATPTQ PDLSANKPAG VKTLPADSNN VASAAGITKG
201: SNGSAPVKPT NQATLNTSSN LYGMGAPGGG LAAGYQDPRY AYEGYYAPVP WHDGSKYSDV QRPVSGSGVA SSYSKSSTVP SSRNQNYRSN SHYTSVHQPS
301: SVTGYGTAQG YYNRMYQNKL YGQYGSTGRS ALGYGSSGYD SRTNGRGWAA TDNKYRSWGR GNSYYYGNEN NVDGLNELNR GPRAKGTKNQ KGNLDDSLEV
401: KEQTGESNVT EVGEADNTCV VPDREQYNKE DFPVDYANAM FFIIKSYSED DVHKSIKYNV WASTPNGNKK LAAAYQEAQQ KAGGCPIFLF FSVNASGQFV
501: GLAEMTGPVD FNTNVEYWQQ DKWTGSFPLK WHIVKDVPNS LLKHITLENN ENKPVTNSRD TQEVKLEQGL KIVKIFKEHS SKTCILDDFS FYEVRQKTIL
601: EKKAKQTQKQ VSEEKVTDEK KESATAESAS KESPAAVQTS SDVKVAENGS VAKPVTGDVV ANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.