CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97615
EES00612
OQU77359

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	EER97615	AT3G17510.1	16113215
AT3G13460.1	EES00612	AT3G17510.1	16113215
AT3G13460.1	OQU77359	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G439200.1	Wheat	cytosol	65.91	58.72
TraesCS5A01G431100.1	Wheat	cytosol	65.56	58.41
TraesCS5B01G432900.2	Wheat	extracellular	65.56	57.87
HORVU5Hr1G104390.3	Barley	plastid	63.81	53.05
CDY57677	Canola	mitochondrion	15.56	52.05
KXG34475	Sorghum	cytosol	53.32	47.21
Bra004105.1-P	Field mustard	nucleus	30.59	44.19
CDY07437	Canola	nucleus	32.34	43.94
Bra008509.1-P	Field mustard	cytosol	32.34	43.74
CDY39299	Canola	nucleus	31.82	43.03
CDY52966	Canola	cytosol	33.57	42.86
CDY50448	Canola	cytosol	19.06	42.75
CDY56132	Canola	nucleus	33.39	42.73
Bra036423.1-P	Field mustard	nucleus	29.37	41.38
CDY69959	Canola	nucleus	28.85	41.35
CDY21154	Canola	nucleus	29.37	41.28
CDY50867	Canola	nucleus	28.85	41.25
CDY42891	Canola	nucleus	28.85	41.25
AT3G03950.3	Thale cress	cytosol	30.59	40.89
CDY29972	Canola	nucleus	29.2	40.73
Bra031960.1-P	Field mustard	nucleus	28.15	40.66
CDX91541	Canola	mitochondrion	11.36	39.88
AT1G55500.5	Thale cress	cytosol	41.08	38.84
AT5G61020.1	Thale cress	cytosol	33.22	38.38
VIT_06s0004g00200.t01	Wine grape	nucleus	45.98	37.3
VIT_08s0007g07450.t01	Wine grape	cytosol	44.76	36.89
AT3G13460.1	Thale cress	cytosol	42.31	36.28
EER93461	Sorghum	nucleus	41.78	36.27
CDY24182	Canola	nucleus	34.27	36.23
CDX75712	Canola	nucleus	39.86	35.96
CDY23602	Canola	nucleus	39.16	35.9
CDX82538	Canola	nucleus	40.03	35.78
Bra001506.1-P	Field mustard	nucleus	39.86	35.68
CDY43989	Canola	nucleus	39.51	35.65
KRH59123	Soybean	nucleus	44.06	35.59
Bra014253.1-P	Field mustard	cytosol	18.53	35.57
Bra018951.1-P	Field mustard	cytosol	16.08	35.52
Bra027432.1-P	Field mustard	nucleus	39.34	35.49
KRH43005	Soybean	nucleus	43.53	35.22
Solyc01g028860.2.1	Tomato	nucleus	43.36	35.13
CDY07089	Canola	nucleus	38.64	34.75
Bra039400.1-P	Field mustard	nucleus	38.64	34.75
Bra038524.1-P	Field mustard	cytosol	13.46	34.22
KXG40139	Sorghum	plastid	42.48	34.18
KRG94807	Soybean	nucleus	39.34	34.14
KRH70155	Soybean	nucleus	37.24	33.81
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	43.36	33.7
KRH06717	Soybean	nucleus	38.99	33.63
KXG27074	Sorghum	cytosol	29.9	30.98
EES14722	Sorghum	nucleus	31.99	30.81
KXG25412	Sorghum	cytosol	33.04	29.58
OQU87332	Sorghum	mitochondrion, nucleus	30.07	25.63
KXG21015	Sorghum	nucleus	27.27	23.89
KXG24185	Sorghum	nucleus	25.17	19.65
OQU77486	Sorghum	cytosol	19.58	15.82

Protein Annotations

EnsemblPlants:EER93313	EnsemblPlantsGene:SORBI_3001G060500	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF34	PFAM:PF04146
PFscan:PS50882	ProteinID:EER93313	ProteinID:EER93313.2	SEG:seg	UniParc:UPI00081AE4DC	UniProt:C5WY21
MapMan:16.5.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:4523110..4527828

Molecular Weight (calculated)

62444.5 Da

IEP (calculated)

8.500

GRAVY (calculated)

-0.675

Length

572 amino acids

Sequence
(BLAST)

001: MAFVAPAAVH VADLLQTLSL VDPKSEGGKG PKTNDKASGG RNGVSKGEVV SLNPLASSTE PWAQQDYKDA AMYYGAYPGA YYCGGWGDYS IYVSQDGGDA
101: LSPGVYGDMY CYPHYGIADG QIYGSQHCQY PSTYYQPKTT ASKPVYKAKT GKSSPLIQED VSTVTTADQQ PVLLDSSKTT LKSIDGVKGL KKETLPLKPN
201: GCFGNYQNQG SKTAYPGSGG RTSSEKYLKF SGGSPTSTVS NNKGLHGQNS SMGLPSAGFT SSVYSGSGMY NTNTYAPSFW YGSHVYGPGL YGGWNAFSNG
301: KYRPRGKTYG SYGFGNENLD SLDELKRGPR SSLFKKQQGS GAAVDSKGQE PPNSDGSNAV KQEQYNLADF CETYSDAKFF IIKSYSEDNV HKSIKYNVWA
401: STPSGNKKLD AAYQEAKEKS SSCPVFLLFS VNTSGQFVGL AEMVGQVDFN KTVEYWQQDK WAGCFPVKWH IVKDIPNSSL KHIILEYNEN KPVTNSRDTQ
501: EVKLDQGLQV LKIFKDHASK TSILDDFSFY DDREKIMQEK KSKHQHPVEV MNRKLAATNI AENQATDGKQ SV

Best Arabidopsis Sequence Match ( AT5G61020.2 )
(BLAST)

001: MANPDHVSDV LHNLSIDPTT KALAPDSETK GAYGGNGNDF LLNDELVEAT KIGKPSLLSK DGGVTKDKGS NLKKLGYQSA AYNAKGSYGK GAYAYGYYPP
101: AYQYPRHGYT GSYASGKTNL QYQYLTQQGR SAGNGQSYGG YMDNIYSNYG MCGPYTNGYG YGSYGYDSWK YMPNWYAVNN TYKPRNGYHG YGKENIEGLN
201: EMNRGPRAKG FNSQDGSKVM AVSLKEQRVT ETEKLSEDVS LLDPKDYNKI DFPETYTEAK FYVIKSYSED DIHKSIKYSV WSSTPNGNKK LDASYNEAKQ
301: KSDGCPVFLL FSVNTSGQFV GLAEMVGPVD FNKTVEYWQQ DKWIGCFPVK WHFVKDIPNS SLRHITLENN ENKPVTNSRD TQEVKLEQGI KVIKIFKDHA
401: SKTCILDDFE FYENRQKIIQ ERKSKHLQIK KQTLVANADK GVMSKINLVK PQESTTASED AAALGVAAEV TKESKVVKET ELPVEKNAVA TAC

Arabidopsis Description

ECT3ECT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UM32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.