Factsheet for Bra001506.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001665.1-P
Bra022219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	Bra001665.1-P	AT3G17510.1	16113215
AT3G13460.1	Bra022219.1-P	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82538	Canola	nucleus	97.81	97.66
Bra027432.1-P	Field mustard	nucleus	84.04	84.7
Bra039400.1-P	Field mustard	nucleus	80.91	81.29
AT3G13460.1	Thale cress	cytosol	81.06	77.66
VIT_06s0004g00200.t01	Wine grape	nucleus	61.03	55.32
KRH43005	Soybean	nucleus	59.47	53.75
KRH59123	Soybean	nucleus	59.0	53.25
Solyc01g028860.2.1	Tomato	nucleus	56.49	51.13
Bra004105.1-P	Field mustard	nucleus	31.46	50.76
GSMUA_Achr7P01490_001	Banana	nucleus	42.72	48.75
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	56.02	48.64
Bra008509.1-P	Field mustard	cytosol	32.08	48.46
Bra031960.1-P	Field mustard	nucleus	29.73	47.98
GSMUA_Achr4P22630_001	Banana	nucleus	46.32	47.67
Bra036423.1-P	Field mustard	nucleus	30.05	47.29
GSMUA_Achr7P27220_001	Banana	cytosol	48.04	46.44
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	44.29	46.02
GSMUA_Achr4P21380_001	Banana	nucleus	47.1	45.74
GSMUA_Achr4P14820_001	Banana	cytosol	23.63	45.62
GSMUA_Achr5P02830_001	Banana	cytosol	43.98	45.62
EER93461	Sorghum	nucleus	45.85	44.46
Os03t0748000-01	Rice	plasma membrane	45.07	43.57
Zm00001d034005_P003	Maize	plasma membrane	44.91	43.48
KXG40139	Sorghum	plastid	48.04	43.18
TraesCS5B01G391500.1	Wheat	nucleus	44.6	43.05
TraesCS5D01G396400.3	Wheat	nucleus	44.29	42.75
Os03t0158500-01	Rice	nucleus	47.26	42.72
TraesCS5A01G386600.2	Wheat	nucleus	44.13	42.53
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	44.13	42.41
TraesCS4D01G273200.4	Wheat	cytosol	45.54	40.25
EER93313	Sorghum	cytosol	35.68	39.86
TraesCS4A01G031600.2	Wheat	cytosol	45.38	39.78
Bra018951.1-P	Field mustard	cytosol	16.12	39.77
HORVU4Hr1G072940.4	Barley	cytosol	46.01	39.62
Bra038524.1-P	Field mustard	cytosol	13.93	39.56
TraesCS5A01G431200.1	Wheat	nucleus	36.31	39.39
KXG34475	Sorghum	cytosol	39.75	39.32
TraesCS5D01G439100.1	Wheat	nucleus	36.15	39.29
TraesCS4B01G274500.2	Wheat	plastid	46.95	39.11
TraesCS5B01G433000.1	Wheat	cytosol	36.46	39.09
Zm00001d048424_P003	Maize	plastid	45.23	39.05
Bra014253.1-P	Field mustard	cytosol	18.0	38.59
Os07t0170300-01	Rice	plasma membrane	35.05	37.21
Zm00001d027731_P012	Maize	plastid	46.48	36.99
TraesCS5A01G431100.1	Wheat	cytosol	36.78	36.6
Zm00001d007890_P002	Maize	mitochondrion	37.4	36.6
TraesCS5B01G432900.2	Wheat	extracellular	36.78	36.27
TraesCS5D01G439200.1	Wheat	cytosol	36.31	36.14
Bra008406.1-P	Field mustard	cytosol	25.2	35.94
Bra035104.1-P	Field mustard	cytosol	24.73	35.67
Zm00001d018896_P002	Maize	mitochondrion	39.12	35.41
Bra034710.1-P	Field mustard	nucleus	32.86	35.35
HORVU5Hr1G104380.1	Barley	plastid	36.46	35.25
Bra039366.1-P	Field mustard	nucleus	32.39	34.44
HORVU5Hr1G104390.3	Barley	plastid	35.52	32.99
Bra003615.1-P	Field mustard	nucleus	25.67	32.22
Bra019988.1-P	Field mustard	nucleus	25.2	32.14
Bra006780.1-P	Field mustard	cytosol	25.04	31.43
Bra010911.1-P	Field mustard	nucleus	25.2	30.9
Bra018708.1-P	Field mustard	nucleus	28.01	29.44
Bra020382.1-P	Field mustard	nucleus	25.35	29.29

Protein Annotations

EnsemblPlants:Bra001506.1	EnsemblPlants:Bra001506.1-P	EnsemblPlantsGene:Bra001506	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	ncoils:Coil	PANTHER:PTHR12357
PANTHER:PTHR12357:SF63	PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI00025408EA	UniProt:M4CBC6
MapMan:16.5.2.1	:	:	:	:	:

Description

AT3G13460 (E=5e-245) ECT2 | ECT2; protein binding

Coordinates

chrA03:-:16736536..16739294

Molecular Weight (calculated)

69172.0 Da

IEP (calculated)

5.421

GRAVY (calculated)

-0.759

Length

639 amino acids

Sequence
(BLAST)

001: MAAVASSPAD QSADMLQNLS LDSQPKAASE IPEPKKTAVY QYGGVDLSGQ VPSFDRSLTP LLPSDAVDPS VCYVPNAYQQ PFYYGYGTGD WSEYTGYQTP
101: EGVDMTSGYG YAAYPYSPAT SPAPQVGGDG QLYGAQQYQY PAFFPAGSFA SSVATPTQGD LAANKAGGLK PAESKNVASA AGMTKGSNGQ AAGKPNNQTA
201: FNTSSNLYGS GAPAGGYAAG YQDARFNYDG YYGTGYSDVQ RPVASSYSKA NSVTSSRNQN YRSNSNYTGV HQPASMTGYG THGYYSKMYQ SKLYGNYGSS
301: GRSGMGYSSS GYDSRTNGRG WGSTTDNRYR GFGRGNSFFY GNENNADGLN ELNRGPRARG AKNQKENSED SLEVKEQTGE SNVAEAVETE NTCIVPDREQ
401: YNKEDFPVDY ANAMFFVIKS YSEDDVHKSI KYNVWASTPN GNKKLAAAYQ EAQQKPGGCP IFLFFSVNAS GQFVGLAEMI GPVDFDTNVD CWQQDKWTGS
501: FPLKWHIVKD VPNSLLKHIT LENNENKPVT NSRDTQEVKL EQGLKIVKIF KEHTSKTCIL DDFSFYEVRQ KTILEKKAKQ HQTQKQVSEE KTTTDEKKET
601: ATADSANKES PPAAQTTGDV KVDENGSVAK PVGVVANGC

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.