Factsheet for GSMUA_Achr8P29890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P24980_001	Banana	nucleus	63.5	62.05
KRH36908	Soybean	cytosol	27.0	49.32
KRH02430	Soybean	cytosol	32.43	37.9
KRH50636	Soybean	cytosol	32.06	37.41
VIT_05s0020g00460.t01	Wine grape	cytosol	32.8	37.25
KRH11876	Soybean	endoplasmic reticulum	31.07	35.95
Bra018708.1-P	Field mustard	nucleus	26.63	35.53
AT3G17330.1	Thale cress	nucleus	25.89	35.29
PGSC0003DMT400011739	Potato	cytosol	30.33	35.19
CDY43306	Canola	cytosol	26.51	35.07
Solyc12g099090.1.1	Tomato	cytosol	29.84	35.07
CDX93645	Canola	nucleus	26.39	34.97
GSMUA_Achr6P12810_001	Banana	nucleus	14.8	34.09
AT1G48110.2	Thale cress	nucleus	26.51	33.65
GSMUA_Achr4P14820_001	Banana	cytosol	13.69	33.53
Os03t0317000-01	Rice	plasma membrane	28.98	33.15
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	28.24	32.12
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	28.11	31.93
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	27.99	31.57
GSMUA_Achr1P10560_001	Banana	nucleus	17.02	31.01
GSMUA_Achr7P01490_001	Banana	nucleus	21.09	30.54
GSMUA_Achr4P12480_001	Banana	cytosol	21.33	29.78
HORVU4Hr1G052390.3	Barley	golgi	27.13	29.33
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	22.07	28.92
GSMUA_Achr6P26690_001	Banana	cytosol	21.45	28.57
GSMUA_Achr4P22630_001	Banana	nucleus	21.45	28.02
GSMUA_Achr7P27220_001	Banana	cytosol	22.56	27.69
GSMUA_Achr5P02830_001	Banana	cytosol	20.84	27.44
GSMUA_Achr4P11560_001	Banana	nucleus	21.7	27.12
GSMUA_Achr4P21380_001	Banana	nucleus	21.82	26.9
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	19.98	26.34
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	22.44	23.61

Protein Annotations

EnsemblPlants:GSMUA_Achr8P29890_001	EnsemblPlants:GSMUA_Achr8T29890_001	EnsemblPlantsGene:GSMUA_Achr8G29890_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF22
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI0002969442	UniProt:M0TUU1	MapMan:16.5.2.1

Description

Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G29890_001]

Coordinates

chr8:-:32123653..32128280

Molecular Weight (calculated)

88783.6 Da

IEP (calculated)

7.610

GRAVY (calculated)

-0.668

Length

811 amino acids

Sequence
(BLAST)

001: MGNELHPEYT FDRRPNYPAA NHYGYLCPAY ESPGEWGDHH GIFGLDGQDL HYMGLQAESL PYVYYSPGYV YAQSPFNQYT SYVPGAVTGL DGSFLGTQQY
101: LSSPSYQPPI SSPAYIPVIV QPSSDFVTSR SMDPFLFGAS TSVATRPTNV STKVPTQASV SVAAASQLAT SMSPSVMLDT SQPLHKNLAA FKPSEGSQFN
201: IQPSNQSSSH ESMMHVSGTT RHQSHGTVAG PSSRGLTNRQ PNVFGWAGQD EQRRRLQSKD DVTDGGRHPY VLGEPNKESK NRLKDQSTSS GVELAGLSQI
301: SASDVQGGCI IISPDDYNKD DFPVNYPDAK FFVIKSYSED DVHKSIKYNV WSSTPNGNKR LNSAYEDAQR KSAGKSRKCP VFLFYSVNAS GQFCGLAEMV
401: GPVDFDQDMD FWQQDKWSGS FPVKWHVIKD VSNASLRHII LENNENKPVT NSRDTQEIPY STGINMLSIF KTSLLRTSIL DDFMFYEVRQ KKMMEDKIRH
501: FGRSYTASLH VPAVVARSGP DGKADHPPRV GENHSSAVVQ ISQAVEYQTD DAAAQPLKSR EKMQDDSASR PPKIDGKHSG VAVDKSQRTD GKQFSPAVSL
601: LPFKADGNSS TDTKDLHFIT GGMQSSEIQF PMGNAKSEPA VNSAKLDEKQ HSLVTNQLPK SEIKPPSFAV SPREDGMEAK QKIQRSPKPD GNLISPNDVN
701: SVGKTGPSGG QAKTSVHSES SDFEPYYLSG DGKDTNAIIK PGMRSVDPKQ GTTMGLEVIP PDVVKVGSMQ IKVDLGESPS RVMSVRAKST EFKGPRLHKK
801: GMSPDGQRPR K

Best Arabidopsis Sequence Match ( AT3G17330.2 )
(BLAST)

001: MVSNSSTDSL VANGGQSDGR GSMQRNGSAI AGLPKDAPKS TTTGQYKQPG IPKNVSTTAS AHSLQGKTAY ANTLLPYGKS DIANGVSSIA SYSYKPCSKI
101: YDARGDNNTT GSTYTSEQNR GSRTRRSRNQ LIVKAYTTKA GNADAEGNIV INPDRYNKED FSIEYSDARF FVIKSYSEDD VHKSIKYGVW SSTLNGNKKL
201: QSVYEDAQRI ATEKSRECPI FLFFSVNSSG LFCGVAEMTG PVSFDRDMDF WQQDKWSGSF PVKWHIIKDV PNSYFRHIIL HNNENKPVTN SRDTQEIILK
301: QGLEVLKLFK HHAEKTSLLD DFMYYEDRQR LMQEERARLP FRTFRRPFPV LNLDFSDRSK KSSKDVVKKP SVTSAETKVV QLKNSDGDEK SNTQEATDDS
401: TPSTLKFGSL AIKPTAGTTF NPTQPKPKPT PSLGSDHKSD SSEEVTGSLA DDIVSVGSLP IKVKGSKELS SKIAAVGTSP LSTQDQFRSK PGF

Arabidopsis Description

ECT6At3g17330 [Source:UniProtKB/TrEMBL;Acc:Q1JPL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.