Factsheet for TraesCS4A01G125600.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	96.66	97.48
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	95.97	96.64
HORVU4Hr1G052390.3	Barley	golgi	87.2	83.6
Os03t0317000-01	Rice	plasma membrane	64.26	65.16
KRH36908	Soybean	cytosol	25.45	41.22
AT3G17330.1	Thale cress	nucleus	27.96	33.78
KRH50636	Soybean	cytosol	31.43	32.52
CDX93645	Canola	nucleus	27.68	32.52
CDY43306	Canola	cytosol	27.68	32.46
KRH02430	Soybean	cytosol	31.15	32.28
Bra018708.1-P	Field mustard	nucleus	27.26	32.24
VIT_05s0020g00460.t01	Wine grape	cytosol	31.15	31.37
AT1G48110.2	Thale cress	nucleus	27.68	31.14
Solyc12g099090.1.1	Tomato	cytosol	29.76	31.01
PGSC0003DMT400011739	Potato	cytosol	30.04	30.9
KRH11876	Soybean	endoplasmic reticulum	29.07	29.81
TraesCS5A01G431200.1	Wheat	nucleus	23.78	29.03
GSMUA_Achr1P24980_001	Banana	nucleus	33.24	28.8
TraesCS7A01G276800.3	Wheat	nucleus	24.62	28.32
TraesCS7A01G291700.1	Wheat	cytosol	23.09	28.14
TraesCS5A01G431100.1	Wheat	cytosol	25.03	28.04
GSMUA_Achr8P29890_001	Banana	cytosol	31.57	27.99
TraesCS1A01G044500.1	Wheat	nucleus	24.9	27.88
TraesCS5A01G386600.2	Wheat	nucleus	25.59	27.75
TraesCS3A01G267700.1	Wheat	nucleus	25.73	26.77
TraesCS4A01G031600.2	Wheat	cytosol	25.17	24.83
TraesCS3A01G199100.2	Wheat	cytosol	22.25	23.22
TraesCS2A01G011400.1	Wheat	nucleus	19.47	19.69
TraesCS1A01G105700.1	Wheat	cytosol	18.78	19.23

Protein Annotations

EnsemblPlants:TraesCS4A01G125600.3	EnsemblPlantsGene:TraesCS4A01G125600	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF60	PFAM:PF04146
PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:	:

Description

No Description!

Coordinates

chr4A:+:162073623..162079615

Molecular Weight (calculated)

77599.0 Da

IEP (calculated)

6.067

GRAVY (calculated)

-0.565

Length

719 amino acids

Sequence
(BLAST)

001: MMSGFGTNSA MGSSSLPSRV VYNTGNDLPV EYIYDQGLSY PATNGYAYYA GFEPPVGWSE NTNYWGVDGQ YLQLTNDNLP YVYCTPGYEF SYSSQDQYTS
101: YMPGMFMGVD GSVVGSQQYF TNPYQPPGSP SGYFPVYLQP TTDLSSAVSL EPPVFSTGTS VASRPVNTSI KDTHQMSGNT MASRTVSSAS PAIGSSHHAY
201: QNQSTNKPSD LPGANVARHD KPSTSHLTVL VDTDKNFQAA SGMGSSGDNG QITDRTEVVP VAAMVGEGAQ SKAVSSSAVK NIVIHPDQYN KADFPCDHPD
301: AKFFVIKSYS EDDVHKSIKY NVWSSTPNGN RRLDAAYSEA KGSQRKCPIF LFFSVNTSGQ FCGVAEMVGP VDFHKDMDFW QQDKWSGSFP LKWHLVKDVP
401: NSTFRHIILE NNENKPVTNS RDTQEMPYKS GINMLKLFKS SPMTTSILDD FPFYEGRQKA MLEQKRRSLG RSFGGLTYVP ALVAKRSVVV EGEPSEVGEG
501: ISSKDPHPGK TGEDSGACEQ PDKTSQTKDG VVTQVLKKDA VSPVEQPEHV KTERHSLDDI HHEQNEGCSV SVSPENAGRE HAGLSELVKS NGKVYSDRES
601: QPVISSTEPN SSGRKGLSQE SGGHDPSDRM KGGASGITKD VKATLLKKTE GLSTSHMDGQ AKGIVNEAPT GVVKVGSVHI KLNVAGGSSS EIIGDGSLEL
701: KGAEHIEQGI STKLIGFSA

Best Arabidopsis Sequence Match ( AT3G17330.1 )
(BLAST)

001: MYTEGASDFV IDQSMYYPAY YSSGYDSSVG LQGGQNENAP YICYTPSYGY AQSPYNPYNP YIPGASIGVD SSFVGFQQYY SDPPYESAAS SPTYVPYVIQ
101: PDMVSNSSTD SLVANGGQSD GRGSMQRNGS AIAGLPKDAP KSTTTGQYKQ PGIPKNVSTT ASAHSLQGKT AYANTLLPYG KSDIANGVSS IASYSYKPCS
201: KIYDARGDNN TTGSTYTSEQ NRGSRTRRSR NQLIVKAYTT KAGNADAEGN IVINPDRYNK EDFSIEYSDA RFFVIKSYSE DDVHKSIKYG VWSSTLNGNK
301: KLQSVYEDAQ RIATEKSREC PIFLFFSVNS SGLFCGVAEM TGPVSFDRDM DFWQQDKWSG SFPVKWHIIK DVPNSYFRHI ILHNNENKPV TNSRDTQEII
401: LKQGLEVLKL FKHHAEKTSL LDDFMYYEDR QRLMQEERAR LPFRTFRRPF PVLNLDFSDR SKKSSKDVVK KPSVTSAETK VVQLKNSDGD EKSNTQEATD
501: DSTPSTLKFG SLAIKPTAGT TFNPTQPKPK PTPSLGSDHK SDSSEEVTGS LADDIVSVGS LPIKVKGSKE LSSKIAAVGT SPLSTQDQFR SKPGF

Arabidopsis Description

ECT6At3g17330 [Source:UniProtKB/TrEMBL;Acc:Q1JPL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.