Factsheet for PGSC0003DMT400011739

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099090.1.1	Tomato	cytosol	91.42	92.61
KRH36908	Soybean	cytosol	38.34	60.36
VIT_05s0020g00460.t01	Wine grape	cytosol	58.23	57.0
KRH02430	Soybean	cytosol	53.22	53.6
KRH50636	Soybean	cytosol	52.36	52.66
KRH11876	Soybean	endoplasmic reticulum	48.07	47.93
Bra018708.1-P	Field mustard	nucleus	39.2	45.07
CDY43306	Canola	cytosol	39.2	44.7
CDX93645	Canola	nucleus	38.63	44.12
AT1G48110.2	Thale cress	nucleus	40.2	43.98
AT3G17330.1	Thale cress	nucleus	37.34	43.87
Os03t0317000-01	Rice	plasma membrane	31.33	30.89
GSMUA_Achr1P24980_001	Banana	nucleus	36.19	30.48
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	31.04	30.43
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	31.04	30.39
GSMUA_Achr8P29890_001	Banana	cytosol	35.19	30.33
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	30.9	30.04
PGSC0003DMT400064041	Potato	cytosol	23.18	28.42
HORVU4Hr1G052390.3	Barley	golgi	29.9	27.87
TraesCS3D01G199400.2	Wheat	cytosol	25.61	26.02
TraesCS3A01G199100.2	Wheat	cytosol	25.61	25.98
TraesCS3B01G232300.2	Wheat	cytosol	25.46	25.91
Os01t0329800-01	Rice	cytosol	26.18	25.85
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	27.18	25.82
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	23.46	25.08
Zm00001d010826_P001	Maize	cytosol	14.74	24.88
Zm00001d034996_P005	Maize	cytosol	24.32	24.71
Zm00001d049729_P008	Maize	cytosol	25.32	24.58
KXG24185	Sorghum	nucleus	25.32	24.15
TraesCS1B01G128700.1	Wheat	cytosol	23.46	23.33
TraesCS1D01G109300.1	Wheat	cytosol	23.03	22.8
TraesCS1A01G105700.1	Wheat	cytosol	22.75	22.65
OQU77486	Sorghum	cytosol	22.46	22.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400011739	EnsemblPlantsGene:PGSC0003DMG400004607	EntrezGene:102589124	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF22
PFAM:PF04146	PFscan:PS50882	PGSC:PGSC0003DMG400004607	RefSeq:XP_006349854.1	RefSeq:XP_015165251.1	RefSeq:XP_015165253.1
SEG:seg	UniParc:UPI0002965B6D	UniProt:M1A026	MapMan:16.5.2.1	:	:

Description

Yth domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004607]

Coordinates

chr12:+:59863894..59872536

Molecular Weight (calculated)

76604.7 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.535

Length

699 amino acids

Sequence
(BLAST)

001: MSSFSSADQP RAESPLELIQ GTEENLQITI PLLQNSQAMY NEGAPEFVVD QGLYYPPATN YGYFCTGLES PGDWDGHQGF FGLDGQDIQY MDAQTESFPY
101: VYYTPNYGCA QSSYNPYNPY IPGAVVGVDG PCAGPQHYYT IPPYENLGSS SYFPMAVPST SSIPANAADP IMDSVLSSTN RADDLRLKRN LSPTSPIFTP
201: TSLGPASGYK SASNRGSESA KINAASSKQH MSHGFSSPSS QVHPGKVAQA IGSIIHGKAL SNHGQLRAPL PPEIDLSNHR SGAHERANTD KIRTKFLNGT
301: TPSDGKVSPD MLMEQNRGPR IDRMKKQLLV KAYSTRAGNV DVQGNIVIHA DEYNRGDFLM DFVNAKFFVI KSYSEDDVHK SIKYNVWSST PNGNKKLNSA
401: YEDAQRITAG NPRGCPIFLF FSVNASGQFC GVAEMTGPVD FYNDMDFWQQ DKWSGSFPVK WHFIKDVPNP NFRHIILENN ENKPVTNSRD TQEIRYKKGI
501: EMLKVFKDYA SRTSLLDDFM YYENRQKLLQ EEKAKLLIRS YDSPFAVPVL DPPRKLNSTP GLPSGESEKI SKCGEQQQSG NCMAVPAELN SIVSKANKES
601: ADNGDKLVAE GGPLVNTALK IGSLTINPKP LEDKPLDVHS TTNTAASTQS VDVVTVGSMP VKVNGYAESS GFLTIGTIPL DPRAFQREEA SGSGKKVLK

Best Arabidopsis Sequence Match ( AT1G48110.1 )
(BLAST)

001: MYTSEAAPDF VVDQGMYYPV DASYGYYCTG YESPGDWENH QMFFGVDGSE VQYTGGQNEN SPYICYTPSY GYAQSPYNPF NPYIPGASIG VDSAFVAPQQ
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK

Arabidopsis Description

ECT7evolutionarily conserved C-terminal region 7 [Source:TAIR;Acc:AT1G48110]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.