Factsheet for TraesCS3B01G575500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G507400.1	Wheat	golgi	96.47	96.47
HORVU3Hr1G111650.1	Barley	cytosol, mitochondrion	93.7	92.08
TraesCS3B01G574600.1	Wheat	mitochondrion	82.12	82.95
Os03t0436400-01	Rice	plasma membrane	80.1	80.3
Os11t0351555-01	Rice	cytosol	80.1	80.3
EER92090	Sorghum	cytosol	79.85	80.05
Zm00001d029582_P001	Maize	extracellular	78.34	78.54
GSMUA_Achr4P16440_001	Banana	cytosol	58.19	66.76
TraesCS7B01G094800.1	Wheat	mitochondrion	66.25	66.75
GSMUA_Achr3P30170_001	Banana	cytosol	57.18	65.42
GSMUA_Achr6P24680_001	Banana	golgi	47.1	62.13
PGSC0003DMT400013949	Potato	cytosol	59.19	60.57
Solyc10g049620.1.1	Tomato	plastid	58.94	60.31
CDY34267	Canola	cytosol	58.94	60.0
Bra013777.1-P	Field mustard	cytosol	58.94	60.0
CDY03474	Canola	cytosol	58.69	59.9
KRH52063	Soybean	nucleus	57.93	59.28
CDY08911	Canola	cytosol	58.19	59.23
Bra010499.1-P	Field mustard	cytosol	57.93	58.97
CDY24831	Canola	cytosol	57.93	58.97
VIT_03s0091g00450.t01	Wine grape	cytosol	57.43	58.61
CDY10994	Canola	cytosol	55.92	58.58
AT4G24220.1	Thale cress	cytosol	57.18	58.51
Bra019241.1-P	Field mustard	cytosol	55.67	58.31
CDX92623	Canola	cytosol	55.67	58.16
VIT_18s0001g09420.t01	Wine grape	cytosol	56.93	57.95
Solyc10g049600.1.1	Tomato	cytosol	55.42	57.14
PGSC0003DMT400025509	Potato	cytosol	54.91	56.19
PGSC0003DMT400039098	Potato	cytosol	54.41	55.67
KRH15431	Soybean	cytosol	8.56	50.0
CDY36344	Canola	extracellular	10.83	50.0
PGSC0003DMT400071398	Potato	cytosol	46.6	46.72
Solyc01g091670.2.1	Tomato	cytosol	45.34	45.92

Protein Annotations

EnsemblPlants:TraesCS3B01G575500.1	EnsemblPlantsGene:TraesCS3B01G575500	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR32487	PANTHER:PTHR32487:SF10
SEG:seg	SUPFAM:SSF51735	TIGR:cd08948	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3B:-:805424655..805425848

Molecular Weight (calculated)

44006.9 Da

IEP (calculated)

4.955

GRAVY (calculated)

-0.190

Length

397 amino acids

Sequence
(BLAST)

001: MSWWWAGAVG AVKKRQDERA AAAEPTFQSV ALILGSTGIV GTSLLDILPR DDTPGGPWKV YAVSRRAPPG WSTPPPSPAV THLQLDLADA AAVRDALAPL
101: TDVTHVFYAA WSSHETEDRN REVNAGMLRN VLSVVVPGCP ALAHVCLQTG RKHYVGPFEA IGKIPAPDPP YTEDTPRLDH PNFYYDLEDV LFHHVSGRDG
201: AVTWSVHRPT VIFGFSPRSA MNVMGSLCVY AAICRKEGTT LRWPGCKVAW EGFTDASDAD LVAEHEIWAA VDPFAKNEAF NCSNGDVFKW KQLWPMLAER
301: FGVEWAGYEG EDSRFSLADA MAGKEAVWTE ILQENELVTT ELEEITSWWF VDAMFSIDIE HLDNMNKSKE HGFLGFRNTV NSFNAWIDKM KASKVVP

Best Arabidopsis Sequence Match ( AT4G24220.1 )
(BLAST)

001: MSWWWAGAIG AAKKKLDEDE PSQSFESVAL IIGVTGIVGN SLAEILPLSD TPGGPWKVYG VARRPRPTWN ADHPIDYIQC DVSDAEDTRS KLSPLTDVTH
101: VFYVTWTNRE SESENCEANG SMLRNVLQAI IPYAPNLRHV CLQTGTKHYL GPFTNVDGPR HDPPFTEDMP RLQIQNFYYT QEDILFEEIK KIETVTWSIH
201: RPNMIFGFSP YSLMNIVGTL CVYAAICKHE GSPLLFPGSK KAWEGFMTAS DADLIAEQQI WAAVDPYAKN EAFNCNNADI FKWKHLWKIL AEQFGIEEYG
301: FEEGKNLGLV EMMKGKERVW EEMVKENQLQ EKKLEEVGVW WFADVILGVE GMIDSMNKSK EYGFLGFRNS NNSFISWIDK YKAFKIVP

Arabidopsis Description

VEP13-oxo-Delta(4,5)-steroid 5-beta-reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9STX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.