CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09420.t01	Wine grape	cytosol	76.29	75.9
Bra013777.1-P	Field mustard	cytosol	75.26	74.87
CDY34267	Canola	cytosol	75.26	74.87
CDY03474	Canola	cytosol	75.0	74.81
Solyc10g049620.1.1	Tomato	plastid	74.74	74.74
PGSC0003DMT400013949	Potato	cytosol	73.97	73.97
AT4G24220.1	Thale cress	cytosol	73.97	73.97
CDY08911	Canola	cytosol	73.97	73.59
Bra010499.1-P	Field mustard	cytosol	73.45	73.08
CDY24831	Canola	cytosol	73.45	73.08
PGSC0003DMT400025509	Potato	cytosol	70.62	70.62
Bra019241.1-P	Field mustard	cytosol	68.3	69.92
Solyc10g049600.1.1	Tomato	cytosol	69.07	69.61
CDY10994	Canola	cytosol	67.78	69.39
CDX92623	Canola	cytosol	67.27	68.68
PGSC0003DMT400039098	Potato	cytosol	68.3	68.3
KRH15431	Soybean	cytosol	11.86	67.65
GSMUA_Achr4P16440_001	Banana	cytosol	57.99	65.03
GSMUA_Achr3P30170_001	Banana	cytosol	55.41	61.96
Zm00001d029582_P001	Maize	extracellular	62.37	61.11
EER92090	Sorghum	cytosol	61.86	60.61
TraesCS3A01G506400.1	Wheat	extracellular	42.27	60.52
TraesCS3A01G506500.1	Wheat	extracellular	42.27	60.52
Os03t0436400-01	Rice	plasma membrane	61.6	60.35
Os11t0351555-01	Rice	cytosol	61.6	60.35
TraesCS3D01G514300.1	Wheat	plastid	60.57	59.8
TraesCS3A01G508600.1	Wheat	cytosol	60.31	59.54
GSMUA_Achr6P24680_001	Banana	golgi	46.13	59.47
TraesCS3B01G574600.1	Wheat	mitochondrion	59.54	58.78
TraesCS3A01G506600.1	Wheat	mitochondrion	59.02	58.27
TraesCS3D01G514400.1	Wheat	plastid	59.54	58.19
TraesCS3B01G575500.1	Wheat	golgi	59.28	57.93
Zm00001d029581_P001	Maize	cytosol	59.54	57.61
PGSC0003DMT400071398	Potato	cytosol	58.76	57.58
TraesCS3A01G507400.1	Wheat	golgi	58.76	57.43
Zm00001d029580_P001	Maize	cytosol	59.02	57.11
HORVU3Hr1G111650.1	Barley	cytosol, mitochondrion	59.02	56.68
Solyc01g091670.2.1	Tomato	cytosol	57.22	56.63
EES08251	Sorghum	mitochondrion	60.05	56.42
HORVU0Hr1G007340.1	Barley	plastid	57.99	56.39
Os07t0601600-00	Rice	plasma membrane	58.25	55.12
Os03t0422600-00	Rice	mitochondrion	37.89	53.85
TraesCS7B01G094800.1	Wheat	mitochondrion	53.09	52.28
TraesCS7D01G191000.1	Wheat	mitochondrion	52.58	51.91
HORVU7Hr1G038590.1	Barley	mitochondrion	52.06	51.66
OQU92343	Sorghum	golgi	45.88	45.64
KRH50766	Soybean	endoplasmic reticulum, plastid	42.53	44.12
KRG98294	Soybean	mitochondrion	39.43	38.83
HORVU3Hr1G055170.1	Barley	mitochondrion	8.25	38.1
KRH30354	Soybean	cytosol	36.86	37.93

Protein Annotations

EntrezGene:100813467	Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02003404	EnsemblPlantsGene:GLYMA_06G044600	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008202	GO:GO:0009611	GO:GO:0010051	GO:GO:0035671	GO:GO:0050662	GO:GO:0055114
UniProt:I1K843	EnsemblPlants:KRH52063	ProteinID:KRH52063	ProteinID:KRH52063.1	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR32487
PANTHER:PTHR32487:SF0	SUPFAM:SSF51735	UniParc:UPI0002339E3F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:3395763..3397446

Molecular Weight (calculated)

43641.5 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.269

Length

388 amino acids

Sequence
(BLAST)

001: MSWWWAGAIG AAKKKFEEEE PPRSFQSVGL VIGVTGIVGN SLAEILPLAD TPAGPWKVYG VARRPRPPWN ADHPVEYIQC DVSDPADAEA KLSALTDVTH
101: VFFVSWTNRS TEAENCEVNG AMLQNVLRAV IPNAPNLRHV SLQTGGKHYI GPFEFIGKIE SHEPPFAEDM PRLDAPNFYY TQEDILFEET AKKEGLTWSV
201: HRPQVIFGFS PYSLMNMIGT LSVYAAICKH EGVPLRFPGT RGAWESYSCA SDADLIAEQH IWAAVDPYAR NEAFNCSNGD VFRWKHLWKV LAEQFGIEEY
301: GFEEEGLSLS ELMKDKGPVW DEIVSENQLL PTKLDEVADW WFVDLIFSGE GMLDSMNKAK EHGFLGFRNS KNSFISWIDK TKAYKIVP

Best Arabidopsis Sequence Match ( AT4G24220.1 )
(BLAST)

001: MSWWWAGAIG AAKKKLDEDE PSQSFESVAL IIGVTGIVGN SLAEILPLSD TPGGPWKVYG VARRPRPTWN ADHPIDYIQC DVSDAEDTRS KLSPLTDVTH
101: VFYVTWTNRE SESENCEANG SMLRNVLQAI IPYAPNLRHV CLQTGTKHYL GPFTNVDGPR HDPPFTEDMP RLQIQNFYYT QEDILFEEIK KIETVTWSIH
201: RPNMIFGFSP YSLMNIVGTL CVYAAICKHE GSPLLFPGSK KAWEGFMTAS DADLIAEQQI WAAVDPYAKN EAFNCNNADI FKWKHLWKIL AEQFGIEEYG
301: FEEGKNLGLV EMMKGKERVW EEMVKENQLQ EKKLEEVGVW WFADVILGVE GMIDSMNKSK EYGFLGFRNS NNSFISWIDK YKAFKIVP

Arabidopsis Description

VEP13-oxo-Delta(4,5)-steroid 5-beta-reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9STX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.