Factsheet for GSMUA_Achr6P24680_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 4
golgi 4
peroxisome 1
extracellular 2
mitochondrion 2
cytosol 1
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	cytosol, extracellular, golgi, mitochondrion, nucleus, peroxisome, plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P16440_001	Banana	cytosol	71.43	62.14
CDY36344	Canola	extracellular	14.95	52.33
GSMUA_Achr3P30170_001	Banana	cytosol	59.8	51.87
TraesCS3A01G506500.1	Wheat	extracellular	44.19	49.08
TraesCS3A01G506400.1	Wheat	extracellular	44.19	49.08
Os03t0436400-01	Rice	plasma membrane	64.12	48.74
Os11t0351555-01	Rice	cytosol	64.12	48.74
Zm00001d029582_P001	Maize	extracellular	63.79	48.48
EER92090	Sorghum	cytosol	63.79	48.48
Solyc10g049620.1.1	Tomato	plastid	62.13	48.2
PGSC0003DMT400013949	Potato	cytosol	61.46	47.68
TraesCS3A01G507400.1	Wheat	golgi	62.46	47.36
TraesCS3D01G514300.1	Wheat	plastid	61.79	47.33
TraesCS3B01G575500.1	Wheat	golgi	62.13	47.1
TraesCS3B01G574600.1	Wheat	mitochondrion	61.46	47.07
TraesCS3A01G508600.1	Wheat	cytosol	61.13	46.82
TraesCS3A01G506600.1	Wheat	mitochondrion	61.13	46.82
CDY03474	Canola	cytosol	60.47	46.79
Bra013777.1-P	Field mustard	cytosol	60.47	46.67
CDY34267	Canola	cytosol	60.47	46.67
AT4G24220.1	Thale cress	cytosol	60.13	46.65
TraesCS3D01G514400.1	Wheat	plastid	61.13	46.35
VIT_18s0001g09420.t01	Wine grape	cytosol	59.8	46.15
KRH52063	Soybean	nucleus	59.47	46.13
HORVU3Hr1G111650.1	Barley	cytosol, mitochondrion	61.46	45.79
HORVU0Hr1G007340.1	Barley	plastid	60.47	45.61
CDY08911	Canola	cytosol	58.8	45.38
VIT_03s0091g00450.t01	Wine grape	cytosol	58.47	45.24
Solyc10g049600.1.1	Tomato	cytosol	57.81	45.19
PGSC0003DMT400025509	Potato	cytosol	58.14	45.1
CDX92623	Canola	cytosol	56.81	45.0
Bra010499.1-P	Field mustard	cytosol	58.14	44.87
CDY24831	Canola	cytosol	58.14	44.87
Bra019241.1-P	Field mustard	cytosol	56.48	44.85
CDY10994	Canola	cytosol	56.48	44.85
Os07t0601600-00	Rice	plasma membrane	60.47	44.39
EES08251	Sorghum	mitochondrion	59.47	43.34
PGSC0003DMT400039098	Potato	cytosol	55.81	43.3
Zm00001d029580_P001	Maize	cytosol	55.81	41.9
HORVU7Hr1G038590.1	Barley	mitochondrion	54.15	41.69
TraesCS7B01G094800.1	Wheat	mitochondrion	54.15	41.37
TraesCS7D01G191000.1	Wheat	mitochondrion	53.82	41.22
Zm00001d029581_P001	Maize	cytosol	54.82	41.15
HORVU3Hr1G055170.1	Barley	mitochondrion	10.96	39.29
Os03t0422600-00	Rice	mitochondrion	34.55	38.1
Solyc01g091670.2.1	Tomato	cytosol	47.18	36.22
PGSC0003DMT400071398	Potato	cytosol	47.51	36.11
OQU92343	Sorghum	golgi	45.85	35.38
KRH15431	Soybean	cytosol	5.98	26.47
GSMUA_Achr5P28860_001	Banana	plastid	33.55	24.28

Protein Annotations

EnsemblPlants:GSMUA_Achr6P24680_001	EnsemblPlants:GSMUA_Achr6T24680_001	EnsemblPlantsGene:GSMUA_Achr6G24680_001	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR32487	PANTHER:PTHR32487:SF10	SUPFAM:SSF51735	TMHMM:TMhelix
UniParc:UPI000296CE39	UniProt:M0T9W4	MapMan:35.1	:	:	:

Description

NAD dependent epimerase/dehydratase family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G24680_001]

Coordinates

chr6:-:25498994..25500650

Molecular Weight (calculated)

33453.9 Da

IEP (calculated)

9.295

GRAVY (calculated)

-0.294

Length

301 amino acids

Sequence
(BLAST)

001: MKKSVFIYFA IPRFILVTLP SQGSKKKGLR KSDKRFVGMS WWWAGAIGAA RKKLDDDFSA AAPRHQSVAL VIGATGIVGS SLIGILPLPD TPGGPWKVYG
101: VSRRSPNPNL SPLSDVTHTG RKHYIGPFES IGKISAHDPP FHEDLPRLNV PNFYYDQEDI LFDELSKRDG AVTWSIHRPG TIFGFSPTSL MNIIGTLCVY
201: AAICRKEGAP LKWFGSRTAW DGFSDASDAD LIAEHQIWAA VDPYAKNEAF NCSNGDGEEG RFKLEDAMRE KDKEHGFLGF RNTLTSFNSW IDKMKAFRIV
301: P

Best Arabidopsis Sequence Match ( AT4G24220.1 )
(BLAST)

001: MSWWWAGAIG AAKKKLDEDE PSQSFESVAL IIGVTGIVGN SLAEILPLSD TPGGPWKVYG VARRPRPTWN ADHPIDYIQC DVSDAEDTRS KLSPLTDVTH
101: VFYVTWTNRE SESENCEANG SMLRNVLQAI IPYAPNLRHV CLQTGTKHYL GPFTNVDGPR HDPPFTEDMP RLQIQNFYYT QEDILFEEIK KIETVTWSIH
201: RPNMIFGFSP YSLMNIVGTL CVYAAICKHE GSPLLFPGSK KAWEGFMTAS DADLIAEQQI WAAVDPYAKN EAFNCNNADI FKWKHLWKIL AEQFGIEEYG
301: FEEGKNLGLV EMMKGKERVW EEMVKENQLQ EKKLEEVGVW WFADVILGVE GMIDSMNKSK EYGFLGFRNS NNSFISWIDK YKAFKIVP

Arabidopsis Description

VEP13-oxo-Delta(4,5)-steroid 5-beta-reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9STX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.