Factsheet for Solyc10g049620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
endoplasmic reticulum 1
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013949	Potato	cytosol	97.68	97.68
Solyc10g049600.1.1	Tomato	cytosol	77.06	77.66
Bra013777.1-P	Field mustard	cytosol	75.26	74.87
CDY34267	Canola	cytosol	75.26	74.87
CDY03474	Canola	cytosol	75.0	74.81
KRH52063	Soybean	nucleus	74.74	74.74
VIT_18s0001g09420.t01	Wine grape	cytosol	75.0	74.62
AT4G24220.1	Thale cress	cytosol	73.2	73.2
CDY08911	Canola	cytosol	72.94	72.56
CDY24831	Canola	cytosol	72.68	72.31
Bra010499.1-P	Field mustard	cytosol	72.68	72.31
Bra019241.1-P	Field mustard	cytosol	67.27	68.87
CDY10994	Canola	cytosol	67.01	68.6
CDX92623	Canola	cytosol	66.49	67.89
GSMUA_Achr4P16440_001	Banana	cytosol	57.99	65.03
GSMUA_Achr3P30170_001	Banana	cytosol	57.99	64.84
KRH15431	Soybean	cytosol	11.34	64.71
CDY36344	Canola	extracellular	13.92	62.79
GSMUA_Achr6P24680_001	Banana	golgi	48.2	62.13
TraesCS3A01G507400.1	Wheat	golgi	60.57	59.19
TraesCS3B01G575500.1	Wheat	golgi	60.31	58.94
Zm00001d029582_P001	Maize	extracellular	60.05	58.84
Solyc01g091670.2.1	Tomato	cytosol	59.28	58.67
EER92090	Sorghum	cytosol	58.76	57.58
Os03t0436400-01	Rice	plasma membrane	58.76	57.58
Os11t0351555-01	Rice	cytosol	58.76	57.58
TraesCS3A01G506600.1	Wheat	mitochondrion	57.73	57.0
HORVU3Hr1G111650.1	Barley	cytosol, mitochondrion	59.28	56.93
TraesCS3A01G506400.1	Wheat	extracellular	39.69	56.83
TraesCS3A01G506500.1	Wheat	extracellular	39.69	56.83
TraesCS3D01G514300.1	Wheat	plastid	56.7	55.98
TraesCS3D01G514400.1	Wheat	plastid	56.7	55.42
TraesCS3A01G508600.1	Wheat	cytosol	55.93	55.22
TraesCS3B01G574600.1	Wheat	mitochondrion	55.41	54.71
Zm00001d029581_P001	Maize	cytosol	54.9	53.12
HORVU7Hr1G038590.1	Barley	mitochondrion	53.35	52.94
HORVU0Hr1G007340.1	Barley	plastid	54.38	52.88
Zm00001d029580_P001	Maize	cytosol	54.64	52.87
EES08251	Sorghum	mitochondrion	56.19	52.78
Os07t0601600-00	Rice	plasma membrane	55.67	52.68
TraesCS7D01G191000.1	Wheat	mitochondrion	53.09	52.42
TraesCS7B01G094800.1	Wheat	mitochondrion	53.09	52.28
Os03t0422600-00	Rice	mitochondrion	33.51	47.62
OQU92343	Sorghum	golgi	44.07	43.85
HORVU3Hr1G055170.1	Barley	mitochondrion	8.76	40.48

Protein Annotations

EnsemblPlants:Solyc10g049620.1.1	EnsemblPlantsGene:Solyc10g049620.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0047787	GO:GO:0050662	GO:GO:0055114
InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR32487	PANTHER:PTHR32487:SF0	PFAM:PF01370	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000276A091	UniProt:K4D0B9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr10:+:46278921..46280179

Molecular Weight (calculated)

43768.2 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.210

Length

388 amino acids

Sequence
(BLAST)

001: MSWWWAGAIG AAKKKFEDDE APPKYESVAL IIGVTGIVGN SLAEILPLAD TPGGPWKVYG VARRARPSWN ADHPIEYVQC DISNPEDTQS KLSVLTDVTH
101: VFYVTWANRS TEVENCEING KMFRNVLNVI IPNCPNLRHI CLQTGRKHYL GPFELYGKVS HDPPFHEDLP RLDAPNFYYV LEDILFKEVE KKEGLTWSVH
201: RPGTIFGFSP YSLMNIVGTL CVYAAICKHE GLPLKFPGVK GAWDGYSDCS DADLIAEHQI WAAVDPYAKN EAFNVSNGDV FKWKHFWKVL GEQFGLEAAE
301: FDEGKRCTLV EMMKDKGAVW DEIVKENGLV PTKLEEVGVW WFVDLILSGD CALDTMNKSK EHGFLGFRNS QKAFISWIDK VKAYKVVP

Best Arabidopsis Sequence Match ( AT4G24220.1 )
(BLAST)

001: MSWWWAGAIG AAKKKLDEDE PSQSFESVAL IIGVTGIVGN SLAEILPLSD TPGGPWKVYG VARRPRPTWN ADHPIDYIQC DVSDAEDTRS KLSPLTDVTH
101: VFYVTWTNRE SESENCEANG SMLRNVLQAI IPYAPNLRHV CLQTGTKHYL GPFTNVDGPR HDPPFTEDMP RLQIQNFYYT QEDILFEEIK KIETVTWSIH
201: RPNMIFGFSP YSLMNIVGTL CVYAAICKHE GSPLLFPGSK KAWEGFMTAS DADLIAEQQI WAAVDPYAKN EAFNCNNADI FKWKHLWKIL AEQFGIEEYG
301: FEEGKNLGLV EMMKGKERVW EEMVKENQLQ EKKLEEVGVW WFADVILGVE GMIDSMNKSK EYGFLGFRNS NNSFISWIDK YKAFKIVP

Arabidopsis Description

VEP13-oxo-Delta(4,5)-steroid 5-beta-reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9STX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.