Factsheet for VIT_18s0001g09420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52063	Soybean	nucleus	75.9	76.29
Solyc10g049620.1.1	Tomato	plastid	74.62	75.0
PGSC0003DMT400013949	Potato	cytosol	74.36	74.74
Bra013777.1-P	Field mustard	cytosol	72.31	72.31
CDY34267	Canola	cytosol	72.31	72.31
VIT_03s0091g00450.t01	Wine grape	cytosol	71.79	71.98
CDY03474	Canola	cytosol	71.54	71.72
AT4G24220.1	Thale cress	cytosol	71.28	71.65
PGSC0003DMT400025509	Potato	cytosol	71.03	71.39
Solyc10g049600.1.1	Tomato	cytosol	69.74	70.65
PGSC0003DMT400039098	Potato	cytosol	70.26	70.62
CDY08911	Canola	cytosol	70.26	70.26
CDY24831	Canola	cytosol	69.74	69.74
Bra010499.1-P	Field mustard	cytosol	69.74	69.74
Bra019241.1-P	Field mustard	cytosol	66.41	68.34
CDY10994	Canola	cytosol	65.9	67.81
CDX92623	Canola	cytosol	65.13	66.84
GSMUA_Achr4P16440_001	Banana	cytosol	55.9	63.01
GSMUA_Achr3P30170_001	Banana	cytosol	54.87	61.67
GSMUA_Achr6P24680_001	Banana	golgi	46.15	59.8
Solyc01g091670.2.1	Tomato	cytosol	58.97	58.67
PGSC0003DMT400071398	Potato	cytosol	58.46	57.58
Zm00001d029582_P001	Maize	extracellular	58.46	57.58
TraesCS3A01G506500.1	Wheat	extracellular	40.0	57.56
TraesCS3A01G506400.1	Wheat	extracellular	40.0	57.56
Os03t0436400-01	Rice	plasma membrane	58.21	57.32
Os11t0351555-01	Rice	cytosol	58.21	57.32
CDY36344	Canola	extracellular	12.56	56.98
TraesCS3B01G575500.1	Wheat	golgi	57.95	56.93
TraesCS3D01G514300.1	Wheat	plastid	57.18	56.74
TraesCS3A01G508600.1	Wheat	cytosol	57.18	56.74
EER92090	Sorghum	cytosol	57.44	56.57
TraesCS3A01G507400.1	Wheat	golgi	57.18	56.17
TraesCS3A01G506600.1	Wheat	mitochondrion	56.41	55.98
TraesCS3D01G514400.1	Wheat	plastid	56.92	55.92
KRH15431	Soybean	cytosol	9.74	55.88
TraesCS3B01G574600.1	Wheat	mitochondrion	56.15	55.73
Zm00001d029580_P001	Maize	cytosol	56.41	54.86
Zm00001d029581_P001	Maize	cytosol	56.15	54.61
HORVU3Hr1G111650.1	Barley	cytosol, mitochondrion	56.41	54.46
HORVU0Hr1G007340.1	Barley	plastid	55.38	54.14
EES08251	Sorghum	mitochondrion	56.67	53.51
TraesCS7B01G094800.1	Wheat	mitochondrion	52.05	51.52
Os07t0601600-00	Rice	plasma membrane	54.1	51.46
TraesCS7D01G191000.1	Wheat	mitochondrion	51.54	51.15
HORVU7Hr1G038590.1	Barley	mitochondrion	51.03	50.9
Os03t0422600-00	Rice	mitochondrion	34.1	48.72
VIT_05s0077g01310.t01	Wine grape	cytosol	43.59	44.85
VIT_05s0077g01300.t01	Wine grape	endoplasmic reticulum, extracellular, peroxisome	42.56	44.15
OQU92343	Sorghum	golgi	43.59	43.59
HORVU3Hr1G055170.1	Barley	mitochondrion	7.69	35.71

Protein Annotations

EntrezGene:100247199	wikigene:100247199	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:AEX31542	ProteinID:AEX31542.1
ProteinID:CCB45771	ProteinID:CCB45771.1	UniProt:F6GZN9	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
GO:GO:0003854	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008202
GO:GO:0009611	GO:GO:0010051	GO:GO:0016491	GO:GO:0035671	GO:GO:0047568	GO:GO:0055114
GO:GO:0102294	EMBL:JF460012	EntrezGene:LOC100247199	wikigene:LOC100247199	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR32487
PANTHER:PTHR32487:SF0	SUPFAM:SSF51735	TIGR:TC51956	UniParc:UPI000198535A	ArrayExpress:VIT_18s0001g09420	EnsemblPlantsGene:VIT_18s0001g09420
EnsemblPlants:VIT_18s0001g09420.t01	unigene:Vvi.196	RefSeq:XP_002285152	RefSeq:XP_002285152.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:7890228..7891639

Molecular Weight (calculated)

44536.0 Da

IEP (calculated)

4.864

GRAVY (calculated)

-0.326

Length

390 amino acids

Sequence
(BLAST)

001: MSWWWAGAIG AAKKKFDEDD APRGFQSVGL VIGVTGIVGN SLAEILPLSD TPGGPWKVYG VARRPRPDWN ADHPVEYIQC DISDSEDALA KLSPLTDVTH
101: VFYVTWTNRA TEIENCEANG TMLRNVLRAL IPNAPNLRHI CLQTGGKHYI GPFEAFGKIK PHDPPYHEDL PRLDAPNFYY TLEDILFEEC EKKDDLTWSV
201: HRPVIIFGFS PYSMMNILGT LCIYAAICKH EGIPLKFPGS KAAWDCYSDA SDADLIAEQQ IWATVDPYAR NEAFNITNGD LFKWKHLWKV LAEQFDMEYA
301: EFEEGEEKQS MVEMMKDKGP VWEEIVREKE LLPTKLEDVA QWWFIDLVLG GESLLNCMNK SKEHGFLGFR NSRNSFVWWI DKMRGHKLIP

Best Arabidopsis Sequence Match ( AT4G24220.1 )
(BLAST)

001: MSWWWAGAIG AAKKKLDEDE PSQSFESVAL IIGVTGIVGN SLAEILPLSD TPGGPWKVYG VARRPRPTWN ADHPIDYIQC DVSDAEDTRS KLSPLTDVTH
101: VFYVTWTNRE SESENCEANG SMLRNVLQAI IPYAPNLRHV CLQTGTKHYL GPFTNVDGPR HDPPFTEDMP RLQIQNFYYT QEDILFEEIK KIETVTWSIH
201: RPNMIFGFSP YSLMNIVGTL CVYAAICKHE GSPLLFPGSK KAWEGFMTAS DADLIAEQQI WAAVDPYAKN EAFNCNNADI FKWKHLWKIL AEQFGIEEYG
301: FEEGKNLGLV EMMKGKERVW EEMVKENQLQ EKKLEEVGVW WFADVILGVE GMIDSMNKSK EYGFLGFRNS NNSFISWIDK YKAFKIVP

Arabidopsis Description

VEP13-oxo-Delta(4,5)-steroid 5-beta-reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9STX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.