Factsheet for VIT_19s0014g01630.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21996	Soybean	mitochondrion	74.24	65.62
CDY45111	Canola	plastid	36.36	65.45
PGSC0003DMT400039795	Potato	mitochondrion	73.74	64.89
Solyc12g014190.1.1	Tomato	mitochondrion	73.23	64.59
GSMUA_Achr1P06960_001	Banana	cytosol	40.15	63.86
CDX70907	Canola	plastid	70.2	60.04
Bra006535.1-P	Field mustard	plastid	69.95	59.83
CDX88863	Canola	plastid	69.7	59.61
Bra020081.1-P	Field mustard	plastid	68.94	58.84
AT5G20040.3	Thale cress	mitochondrion	66.92	56.5
Zm00001d036339_P001	Maize	cytosol, mitochondrion, nucleus, plastid	58.33	56.48
KXG36879	Sorghum	mitochondrion	58.84	52.36
TraesCS7A01G560300.1	Wheat	mitochondrion	58.33	50.99
TraesCS7D01G549300.1	Wheat	mitochondrion, plastid	58.33	50.88
TraesCS7B01G486700.1	Wheat	mitochondrion, plastid	57.32	50.22
HORVU7Hr1G120070.12	Barley	mitochondrion	59.09	48.15
OQU77179	Sorghum	mitochondrion	58.33	45.74
VIT_08s0040g01010.t01	Wine grape	cytosol, nucleus, plastid	16.16	24.81
VIT_07s0104g00270.t01	Wine grape	cytosol, mitochondrion, plastid	19.95	24.61
VIT_09s0070g00710.t01	Wine grape	mitochondrion	17.68	22.58
VIT_01s0011g03640.t01	Wine grape	plastid	18.18	21.82
VIT_05s0020g02630.t01	Wine grape	cytosol	17.42	20.91
VIT_06s0061g01410.t01	Wine grape	nucleus	21.97	18.35

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:3.40.50.300	MapMan:50.2.5	ProteinID:CCB46275	ProteinID:CCB46275.1
UniProt:F6H1X9	EMBL:FN595229	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0004161	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006400	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0052381	InterPro:IPT	HAMAP:MF_00185	InterPro:P-loop_NTPase
PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF50	SUPFAM:SSF52540	TIGRFAMs:TIGR00174	UniParc:UPI0002109546
ArrayExpress:VIT_19s0014g01630	EnsemblPlantsGene:VIT_19s0014g01630	EnsemblPlants:VIT_19s0014g01630.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:1707593..1726403

Molecular Weight (calculated)

45460.2 Da

IEP (calculated)

9.531

GRAVY (calculated)

-0.510

Length

396 amino acids

Sequence
(BLAST)

001: MPLLRSPPFF FVRSRRLFGT TCSVSGTKKK NKEKVIVISG PTGAGKSRLA LELAKRLNGE IISADSVQVY RGLDVGSAKP SLMDRKEVPH HLVDILHPSE
101: DYSVGQFFED AREKTRDILN SERVPIVAGG TGLYLRWFIY GKPDVPKASR EIASEVYSEL MDLQRNGDWD AAVQLVVKAG DSKAQSLAAN DWYRLRRSLE
201: IIKSSGSPPS AFHVPYDSFR EHQRLELYRS IDLRCEDMLL GSDGILSEAR WLLDNGLLPN SNSATRAIGY RQAMEYLVTC REQGGRSSPQ EFYAFLSEFQ
301: KASRNFAKRQ MTWFRNELIY HWLDASRPLE MVLNFIHDAY YDQTGKLVVP KSLSMKKDMS NNREIKELKA YRTKNRHFIN REDCSDILDW IWRTQQ

Best Arabidopsis Sequence Match ( AT5G20040.1 )
(BLAST)

001: MVIGSGVFLT RTCYLRLQPP SLVLRRRFCA ATTACSVPLN GNKKKKSEKE KVIVISGPTG AGKSRLAMEL AKRLNGEIIS ADSVQVYKGL DVGSAKPSDS
101: DRKVVPHHLI DILHPSQDYS VGQFYDDGRQ ATKDILNRGR VPIVTGGTGL YLRWFMYGKP DVPKPSPEVI AEAHDMLVGF QTEYNWDAAV ELVVNAGDPK
201: ASSLPRNDWY RLRRSLEILK STGSPPSSFR IPYDSFRVNL VAPDADDFLE DGSSADISIQ NIETDLDYDF LCFFLSSPRV ALYRSIDFRC EDMLSGPNGV
301: LSEARWLLDL GLLPNSNPAT RAIGYRQAME YLLQCRRYEG ESSPREFYAF LNKFQTASRN FAKRQMTWFR CEPMYHWLNA SKPLDSILQC IYDAYESEAE
401: MVEIPESLRM SKDVRDSREA SELKGYRSKN RHFVRREDCS SVLEWIRSEG CKSEASCVES AIA

Arabidopsis Description

ATIPT9Isopentenyltransferase 9 [Source:UniProtKB/TrEMBL;Acc:F4K2Q7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.