CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006535.1-P	Field mustard	plastid	96.76	96.76
CDX88863	Canola	plastid	96.76	96.76
CDY45111	Canola	plastid	41.47	87.27
AT5G20040.3	Thale cress	mitochondrion	81.86	80.81
VIT_19s0014g01630.t01	Wine grape	mitochondrion	60.04	70.2
PGSC0003DMT400039795	Potato	mitochondrion	62.42	64.22
Solyc12g014190.1.1	Tomato	mitochondrion	61.77	63.7
KRH21996	Soybean	mitochondrion	61.12	63.17
GSMUA_Achr1P06960_001	Banana	cytosol	30.89	57.43
Zm00001d036339_P001	Maize	cytosol, mitochondrion, nucleus, plastid	49.68	56.23
KXG36879	Sorghum	mitochondrion	51.62	53.71
TraesCS7A01G560300.1	Wheat	mitochondrion	52.05	53.2
TraesCS7D01G549300.1	Wheat	mitochondrion, plastid	51.84	52.86
TraesCS7B01G486700.1	Wheat	mitochondrion, plastid	50.97	52.21
HORVU7Hr1G120070.12	Barley	mitochondrion	51.84	49.38
OQU77179	Sorghum	mitochondrion	50.54	46.34
CDY22984	Canola	plastid	15.98	24.1
CDY04228	Canola	plastid	15.98	23.2
CDY07385	Canola	plastid	15.98	23.12
CDY02590	Canola	cytosol	16.41	22.75
CDY63340	Canola	plastid	16.2	22.59
CDY67797	Canola	mitochondrion	16.2	22.59
CDX82308	Canola	plastid	15.77	22.39
CDY47191	Canola	cytosol	15.98	22.36
CDX93935	Canola	plastid	15.98	22.16
CDY44896	Canola	plastid	15.98	22.09
CDX85119	Canola	plastid	15.77	21.99
CDX77492	Canola	plastid	15.77	21.99
CDX95461	Canola	plastid	15.33	21.91
CDX89173	Canola	mitochondrion, plastid	15.77	21.86
CDX92563	Canola	mitochondrion	15.55	21.56
CDY13945	Canola	mitochondrion	15.55	21.56
CDX81518	Canola	plastid	16.2	21.55
CDY18571	Canola	plastid	14.9	21.3
CDY30532	Canola	cytosol	18.36	18.32
CDY18104	Canola	cytosol	10.58	17.31
CDX77133	Canola	plastid	18.57	12.11

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:3.40.50.300	MapMan:50.2.5	GO:A0A078C2G3	UniProt:A0A078C2G3
EnsemblPlants:CDX70907	ProteinID:CDX70907	ProteinID:CDX70907.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00140815001	InterPro:IPT	HAMAP:MF_00185	InterPro:P-loop_NTPase
PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF50	MetaCyc:PWY-2781	SUPFAM:SSF52540	TIGRFAMs:TIGR00174
UniParc:UPI0004EC47FE	:	:	:	:	:

Description

BnaC03g09910DBnaC03g09910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078C2G3]

Coordinates

chrLK031791:-:2657305..2660066

Molecular Weight (calculated)

52235.7 Da

IEP (calculated)

7.371

GRAVY (calculated)

-0.427

Length

463 amino acids

Sequence
(BLAST)

001: MVTSSSVFLT ARTCCLRLQP PSLVLRRRLC GATACSVSLN GNTSNKKRNS DKEKVIVISG PTGAGKSRLA LELAKRLNGE IISADSVQVY KGLDVGSAKP
101: SASDRKEVPH HLIDILHPSQ DYSVGQFFED GRQATKDILS RGRVPIVTGG TGLYLRWFIY GKPDVPKPSP EIISEVHDTL LDFQTDHNWD AAVEFVVNAG
201: DRKAYSLARN DWYRLKRSLE ILKSTGSPPS SFRVPYDSFR DNLNSPDAND DFSENDISVQ NIETDLDYDF LCFFLSSPRI DLYRSIDFRC EDMLSGADGV
301: LSEARWLLDL GLLPNTGSAT RAIGYRQAME YLSKCRQQGG VSSPGEFYWF LNKFQQVSRN FAKRQMTWFR CEPMYHWLNA SKPLDTILDF IYDAYEKETE
401: TLVVPDSIRM SKEMRNSREA NALKAYRPRN RHFVGREDCS SVLEWIRSEG CKSEVSCVEG AAI

Best Arabidopsis Sequence Match ( AT5G20040.1 )
(BLAST)

001: MVIGSGVFLT RTCYLRLQPP SLVLRRRFCA ATTACSVPLN GNKKKKSEKE KVIVISGPTG AGKSRLAMEL AKRLNGEIIS ADSVQVYKGL DVGSAKPSDS
101: DRKVVPHHLI DILHPSQDYS VGQFYDDGRQ ATKDILNRGR VPIVTGGTGL YLRWFMYGKP DVPKPSPEVI AEAHDMLVGF QTEYNWDAAV ELVVNAGDPK
201: ASSLPRNDWY RLRRSLEILK STGSPPSSFR IPYDSFRVNL VAPDADDFLE DGSSADISIQ NIETDLDYDF LCFFLSSPRV ALYRSIDFRC EDMLSGPNGV
301: LSEARWLLDL GLLPNSNPAT RAIGYRQAME YLLQCRRYEG ESSPREFYAF LNKFQTASRN FAKRQMTWFR CEPMYHWLNA SKPLDSILQC IYDAYESEAE
401: MVEIPESLRM SKDVRDSREA SELKGYRSKN RHFVRREDCS SVLEWIRSEG CKSEASCVES AIA

Arabidopsis Description

ATIPT9Isopentenyltransferase 9 [Source:UniProtKB/TrEMBL;Acc:F4K2Q7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.