CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007728.1-P	Field mustard	plastid	96.69	96.69
CDY63340	Canola	plastid	96.69	96.69
CDX89173	Canola	mitochondrion, plastid	83.73	83.23
CDX93935	Canola	plastid	83.73	83.23
AT3G63110.1	Thale cress	plastid	83.73	82.74
VIT_07s0104g00270.t01	Wine grape	cytosol, mitochondrion, plastid	53.92	55.76
VIT_09s0070g00710.t01	Wine grape	mitochondrion	49.1	52.58
KRH67172	Soybean	plastid	47.59	51.13
KRG95498	Soybean	mitochondrion	46.39	49.68
Solyc09g064910.1.1	Tomato	mitochondrion	46.69	49.36
KRH71448	Soybean	golgi, mitochondrion, plastid	47.89	48.62
PGSC0003DMT400002509	Potato	mitochondrion	46.69	48.59
KRH31999	Soybean	mitochondrion	49.7	47.97
CDY13945	Canola	mitochondrion	48.19	47.9
CDY47191	Canola	cytosol	47.29	47.43
CDY02590	Canola	cytosol	47.59	47.31
CDX92563	Canola	mitochondrion	47.59	47.31
HORVU5Hr1G110100.1	Barley	mitochondrion	42.77	47.02
CDY22984	Canola	plastid	42.47	45.93
CDX85119	Canola	plastid	45.18	45.18
CDX77492	Canola	plastid	44.88	44.88
GSMUA_AchrUn_...	Banana	cytosol	38.55	44.76
Zm00001d034584_P001	Maize	plastid	44.28	44.68
CDX82308	Canola	plastid	43.07	43.87
TraesCS5A01G181100.1	Wheat	mitochondrion	38.25	43.49
HORVU5Hr1G055240.1	Barley	cytosol, mitochondrion	38.25	43.34
HORVU5Hr1G055220.1	Barley	cytosol, mitochondrion	38.25	43.34
CDX95461	Canola	plastid	42.17	43.21
OQU90772	Sorghum	plastid	43.98	42.94
CDY18571	Canola	plastid	41.87	42.9
Os07t0211700-00	Rice	plastid	44.58	42.65
Zm00001d013021_P001	Maize	plastid	43.07	42.43
Os03t0810100-01	Rice	extracellular	45.48	42.3
HORVU3Hr1G025950.1	Barley	cytosol	43.98	42.2
CDY07385	Canola	plastid	40.66	42.19
Zm00001d005239_P001	Maize	plastid	43.98	42.07
Zm00001d019171_P001	Maize	plastid	46.08	42.03
TraesCS3D01G137000.1	Wheat	cytosol, plastid	44.28	42.0
TraesCS5A01G460000.1	Wheat	plastid	43.98	41.6
TraesCS5D01G471100.1	Wheat	cytosol	43.98	41.6
TraesCS5B01G469600.1	Wheat	cytosol	43.98	41.6
TraesCS3A01G136200.1	Wheat	mitochondrion	43.07	41.33
EER96067	Sorghum	plastid	44.88	41.16
CDY44896	Canola	plastid	41.27	40.9
CDY04228	Canola	plastid	39.16	40.75
TraesCS3B01G154100.1	Wheat	cytosol, mitochondrion, plastid	42.47	40.75
Os05t0311801-00	Rice	cytosol	41.57	40.47
Zm00001d040810_P001	Maize	cytosol	42.47	40.06
Os03t0356900-01	Rice	extracellular	39.16	40.0
CDX81518	Canola	plastid	41.87	39.94
EES02950	Sorghum	cytosol	43.98	39.67
TraesCS5B01G178800.1	Wheat	mitochondrion, plastid	37.95	39.25
TraesCS5D01G185500.1	Wheat	plastid	37.35	38.63
Zm00001d003869_P001	Maize	cytosol	37.05	38.2
CDY18104	Canola	cytosol	32.53	38.16
Os03t0358900-00	Rice	cytosol	37.65	38.11
TraesCS1B01G074400.1	Wheat	cytosol, mitochondrion, plastid	35.54	36.2
EES12063	Sorghum	cytosol	37.05	36.18
GSMUA_AchrUn_...	Banana	mitochondrion	37.35	35.53
TraesCS1B01G323900.1	Wheat	plastid	27.71	32.86
HORVU1Hr1G011480.1	Barley	cytosol, mitochondrion, plastid	37.35	31.63
TraesCS1A01G057000.1	Wheat	cytosol	36.14	30.77
CDY30532	Canola	cytosol	30.72	21.98
CDY45111	Canola	plastid	14.16	21.36
CDX88863	Canola	plastid	22.59	16.2
CDX70907	Canola	plastid	22.59	16.2
CDX77133	Canola	plastid	31.63	14.79

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	MapMan:11.4.1.1	Gene3D:3.40.50.300	GO:A0A078JQY7	UniProt:A0A078JQY7
EnsemblPlants:CDY67797	ProteinID:CDY67797	ProteinID:CDY67797.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00066860001
InterPro:IPT	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF49	MetaCyc:PWY-2781
SUPFAM:SSF52540	UniParc:UPI0004EF478F	SEG:seg	:	:	:

Description

BnaCnng56440DBnaCnng56440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQY7]

Coordinates

chrLK036519:+:1896..3184

Molecular Weight (calculated)

37565.5 Da

IEP (calculated)

8.658

GRAVY (calculated)

-0.172

Length

332 amino acids

Sequence
(BLAST)

001: MIMKISMAMC KQSLPPSTTL DFSPARFGPN MLTLNPYVPK EKVVVIMGAT GTGKSRLSVD LATRFQAEII NSDKIQVHQG LDIVTNKITT EERCGVPHHL
101: LSVLPPQADL TAANFCHMAN LSVESVLNRG KLPIIVGGSN SYVEALVDDD DYKFRSKYDC CFLWVDVALP VLNRFVSERV DKMVQNGMVE EARNFFDYSN
201: SDYSRGIKKA IGVPEFDIFF RNEPFLSVGD REALLNKVVD EIKSNTFKLA CRQREKIERL RKIKKWCIQR FDATPVITRR RSKVDADVAW ERLVARPSTE
301: AVSRFLLDID SRQMFVDAST AAVREREMSL VA

Best Arabidopsis Sequence Match ( AT3G63110.1 )
(BLAST)

001: MIMKISMAMC KQPLPPSPTL DFPPARFGPN MLTLNPYGPK DKVVVIMGAT GTGKSRLSVD IATRFRAEII NSDKIQVHQG LDIVTNKITS EESCGVPHHL
101: LGVLPPEADL TAANYCHMAN LSIESVLNRG KLPIIVGGSN SYVEALVDDK ENKFRSRYDC CFLWVDVALP VLHGFVSERV DKMVESGMVE EVREFFDFSN
201: SDYSRGIKKA IGFPEFDRFF RNEQFLNVED REELLSKVLE EIKRNTFELA CRQREKIERL RKVKKWSIQR VDATPVFTKR RSKMDANVAW ERLVAGPSTD
301: TVSRFLLDIA SRRPLVEAST AVAAAMEREL SRCLVA

Arabidopsis Description

IPT3IPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.