CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07385	Canola	plastid	92.79	92.5
CDY44896	Canola	plastid	86.52	82.39
CDX81518	Canola	plastid	85.58	78.45
AT1G68460.1	Thale cress	plastid	76.49	68.35
CDY22984	Canola	plastid	53.92	56.03
CDX95461	Canola	plastid	55.17	54.32
CDY18571	Canola	plastid	55.17	54.32
CDX82308	Canola	plastid	53.29	52.15
KRH35941	Soybean	cytosol	49.53	51.97
PGSC0003DMT400037749	Potato	cytosol	45.77	51.59
PGSC0003DMT400015411	Potato	cytosol	43.89	50.36
Solyc05g009410.1.1	Tomato	cytosol	44.51	50.18
VIT_01s0011g03640.t01	Wine grape	plastid	51.72	50.0
KRG90838	Soybean	mitochondrion	36.05	49.78
GSMUA_Achr1P12830_001	Banana	cytosol	18.5	48.76
GSMUA_Achr2P06730_001	Banana	cytosol	15.36	47.12
Solyc04g007240.1.1	Tomato	plastid	47.96	47.08
GSMUA_Achr3P29480_001	Banana	cytosol	33.86	41.38
GSMUA_Achr4P06810_001	Banana	cytosol	39.5	41.18
GSMUA_Achr1P23110_001	Banana	cytosol	39.81	41.1
CDX89173	Canola	mitochondrion, plastid	42.95	41.02
CDX93935	Canola	plastid	42.63	40.72
Os01t0688300-00	Rice	mitochondrion	41.38	39.29
CDY63340	Canola	plastid	40.75	39.16
CDY67797	Canola	mitochondrion	40.75	39.16
Os07t0190150-00	Rice	cytosol	28.53	38.72
CDX85119	Canola	plastid	39.19	37.65
CDX77492	Canola	plastid	39.19	37.65
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	42.01	36.31
TraesCS3D01G263000.1	Wheat	plastid	41.07	35.5
TraesCS3B01G296500.1	Wheat	plastid	40.44	35.44
Zm00001d011618_P001	Maize	plastid	38.24	35.06
CDY47191	Canola	cytosol	36.36	35.05
CDY13945	Canola	mitochondrion	36.68	35.03
CDY02590	Canola	cytosol	36.68	35.03
CDX92563	Canola	mitochondrion	36.68	35.03
Os05t0551700-01	Rice	mitochondrion	39.19	34.72
Zm00001d043812_P001	Maize	plastid	37.93	34.18
TraesCS1B01G396700.1	Wheat	plastid	36.99	34.1
KXG33157	Sorghum	mitochondrion, plastid	39.81	33.96
KXG22495	Sorghum	mitochondrion	41.07	33.68
Zm00001d038921_P001	Maize	mitochondrion, plastid	38.87	33.6
HORVU1Hr1G083530.2	Barley	plastid	39.5	33.6
HORVU0Hr1G006770.3	Barley	cytosol	29.15	33.45
TraesCS1D01G383600.1	Wheat	plastid	41.07	33.42
TraesCS1A01G376300.1	Wheat	plastid	41.07	33.33
CDY18104	Canola	cytosol	28.84	32.51
GSMUA_Achr9P21400_001	Banana	cytosol	24.76	28.52
CDY30532	Canola	cytosol	31.66	21.77
CDY45111	Canola	plastid	14.11	20.45
CDX88863	Canola	plastid	23.51	16.2
CDX70907	Canola	plastid	23.2	15.98
CDX77133	Canola	plastid	34.17	15.35

Protein Annotations

EnsemblPlants:CDY04228	EnsemblPlantsGene:GSBRNA2T00117949001	Gene3D:1.10.287.890	Gene3D:3.40.50.300	GO:A0A078EXA8	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPT	InterPro:P-loop_NTPase
KEGG:00908+2.5.1.75	MetaCyc:PWY-2781	PANTHER:PTHR11088	PANTHER:PTHR11088:SF51	PFAM:PF01715	ProteinID:CDY04228
ProteinID:CDY04228.1	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0004EE3A56	MapMan:11.4.1.1	:

Description

BnaC06g25870D

Coordinates

chrLK031950:-:339731..340729

Molecular Weight (calculated)

35886.2 Da

IEP (calculated)

9.293

GRAVY (calculated)

-0.244

Length

319 amino acids

Sequence
(BLAST)

001: MTELNLLPKI SDHFTTTSTS PSFSSHSHFP FSVRTNDQSR PQNLKDKIVV ILGATGAGKS RLSVDIATRL PSEIINSDKI QLYKGLEITT NQITIPDRRG
101: VPHHLLGYLR SEDGELTAGG FRIAASNAVS GITSRKKLPI IAGGSNTFVH ALLAERFDPK IDSFGSGSIC RELRYNCCFV WVDVSETVLF EYLLKRVDEM
201: MGSGMFEELS GFYDPVKASM TRFGIRKAIG VPEFDGYFKM RAAYDKAVEE IKENTLRLAK RQIVKIEKLR DAGWDIKRVD ATASFSAVMM GRRREWREIW
301: EEQVLKPSVK IVNQLLVED

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.