CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004037.1-P	Field mustard	plastid	100.0	96.1
CDY04228	Canola	plastid	92.5	92.79
CDY44896	Canola	plastid	86.25	82.39
CDX81518	Canola	plastid	85.94	79.02
AT1G68460.1	Thale cress	plastid	76.25	68.35
CDY22984	Canola	plastid	54.69	57.0
CDX95461	Canola	plastid	56.56	55.86
CDY18571	Canola	plastid	55.94	55.25
CDX82308	Canola	plastid	54.69	53.68
KRH35941	Soybean	cytosol	50.94	53.62
PGSC0003DMT400037749	Potato	cytosol	45.0	50.88
KRG90838	Soybean	mitochondrion	36.56	50.65
VIT_01s0011g03640.t01	Wine grape	plastid	52.19	50.61
PGSC0003DMT400015411	Potato	cytosol	43.12	49.64
GSMUA_Achr1P12830_001	Banana	cytosol	18.75	49.59
Solyc05g009410.1.1	Tomato	cytosol	43.75	49.47
GSMUA_Achr2P06730_001	Banana	cytosol	15.31	47.12
Solyc04g007240.1.1	Tomato	plastid	46.88	46.15
CDX89173	Canola	mitochondrion, plastid	44.38	42.52
CDX93935	Canola	plastid	43.75	41.92
GSMUA_Achr1P23110_001	Banana	cytosol	40.31	41.75
GSMUA_Achr3P29480_001	Banana	cytosol	33.44	41.0
CDY63340	Canola	plastid	42.19	40.66
CDY67797	Canola	mitochondrion	42.19	40.66
GSMUA_Achr4P06810_001	Banana	cytosol	38.75	40.52
Os01t0688300-00	Rice	mitochondrion	42.19	40.18
Os07t0190150-00	Rice	cytosol	29.38	40.0
CDX85119	Canola	plastid	39.06	37.65
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	43.12	37.4
CDX77492	Canola	plastid	38.75	37.35
TraesCS3D01G263000.1	Wheat	plastid	42.19	36.59
TraesCS3B01G296500.1	Wheat	plastid	41.56	36.54
Zm00001d011618_P001	Maize	plastid	39.38	36.21
TraesCS1B01G396700.1	Wheat	plastid	39.06	36.13
Os05t0551700-01	Rice	mitochondrion	40.31	35.83
CDY47191	Canola	cytosol	36.56	35.35
CDY02590	Canola	cytosol	36.88	35.33
HORVU0Hr1G006770.3	Barley	cytosol	30.62	35.25
TraesCS1D01G383600.1	Wheat	plastid	43.12	35.2
HORVU1Hr1G083530.2	Barley	plastid	41.25	35.2
CDX92563	Canola	mitochondrion	36.56	35.03
CDY13945	Canola	mitochondrion	36.56	35.03
Zm00001d043812_P001	Maize	plastid	38.75	35.03
KXG33157	Sorghum	mitochondrion, plastid	40.94	35.03
TraesCS1A01G376300.1	Wheat	plastid	42.81	34.86
KXG22495	Sorghum	mitochondrion	42.19	34.7
Zm00001d038921_P001	Maize	mitochondrion, plastid	40.0	34.69
CDY18104	Canola	cytosol	28.44	32.16
GSMUA_Achr9P21400_001	Banana	cytosol	24.69	28.52
CDY30532	Canola	cytosol	30.94	21.34
CDY45111	Canola	plastid	14.06	20.45
CDX88863	Canola	plastid	23.44	16.2
CDX70907	Canola	plastid	23.12	15.98
CDX77133	Canola	plastid	33.44	15.07

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	MapMan:11.4.1.1	Gene3D:3.40.50.300	GO:A0A078EZ65	UniProt:A0A078EZ65
EnsemblPlants:CDY07385	ProteinID:CDY07385	ProteinID:CDY07385.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00124368001
InterPro:IPT	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF51	MetaCyc:PWY-2781
SUPFAM:SSF52540	UniParc:UPI0004EE13F5	SEG:seg	:	:	:

Description

BnaA07g24640DBnaA07g24640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EZ65]

Coordinates

chrLK031978:+:374513..375514

Molecular Weight (calculated)

36226.7 Da

IEP (calculated)

9.664

GRAVY (calculated)

-0.257

Length

320 amino acids

Sequence
(BLAST)

001: MTELNFLPTI SDHFTTTSTS LSFSSHSHFP FSVRMNDQSR PQNLKDKIVV ILGATGAGKS RLSVDIATRL PSEIINSDKI QLYKGLEITT NQITIPDRRG
101: VPHHLLGYLP SEDGELTARG FRIAASNAVS DITSRKKLPI IAGGSNTLVH ALLAERFDPK IDPFGSSSIS RELRYNCCFI WVDVSETVLF EYLLKRVDDM
201: MGSGMFEELS RFYDPVKAST TRVGIRKAIG VPEFDGYFKM RAAYDKVVEE IKENTLRLAK RQVVKIEKLR DAGWDIKRVD ATASFRAVLM GRRRREWRGI
301: WEEQVLEPSV KIVNRLLVED

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.