Factsheet for Zm00001d043812_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011618_P001	Maize	plastid	86.44	87.93
KXG33157	Sorghum	mitochondrion, plastid	88.7	83.96
Os01t0688300-00	Rice	mitochondrion	67.51	71.13
TraesCS3B01G296500.1	Wheat	plastid	70.34	68.41
TraesCS3D01G263000.1	Wheat	plastid	70.9	68.02
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	70.34	67.48
Zm00001d038921_P001	Maize	mitochondrion, plastid	67.8	65.04
HORVU0Hr1G006770.3	Barley	cytosol	48.31	61.51
GSMUA_Achr1P12830_001	Banana	cytosol	20.06	58.68
GSMUA_Achr3P29480_001	Banana	cytosol	39.27	53.26
GSMUA_Achr2P06730_001	Banana	cytosol	15.25	51.92
GSMUA_Achr1P23110_001	Banana	cytosol	43.22	49.51
GSMUA_Achr4P06810_001	Banana	cytosol	42.37	49.02
Zm00001d034584_P001	Maize	plastid	37.85	40.73
PGSC0003DMT400015411	Potato	cytosol	31.92	40.65
KRH35941	Soybean	cytosol	33.9	39.47
KRG90838	Soybean	mitochondrion	25.71	39.39
Zm00001d013021_P001	Maize	plastid	37.01	38.87
CDY07385	Canola	plastid	35.03	38.75
Solyc05g009410.1.1	Tomato	cytosol	30.79	38.52
VIT_01s0011g03640.t01	Wine grape	plastid	35.88	38.48
CDY04228	Canola	plastid	34.18	37.93
Bra004037.1-P	Field mustard	plastid	35.59	37.84
Zm00001d005239_P001	Maize	plastid	37.01	37.75
Solyc04g007240.1.1	Tomato	plastid	34.18	37.23
PGSC0003DMT400037749	Potato	cytosol	29.66	37.1
CDY22984	Canola	plastid	31.36	36.16
Zm00001d019171_P001	Maize	plastid	37.01	35.99
CDY44896	Canola	plastid	33.9	35.82
AT3G19160.1	Thale cress	plastid	33.33	35.76
AT4G24650.1	Thale cress	cytosol	31.36	34.91
CDX81518	Canola	plastid	34.18	34.77
Zm00001d040810_P001	Maize	cytosol	33.62	33.81
Bra033933.1-P	Field mustard	plastid	34.75	33.79
CDY18571	Canola	plastid	30.79	33.64
Bra037537.1-P	Field mustard	plastid	30.79	33.64
AT1G68460.1	Thale cress	plastid	33.9	33.61
Zm00001d003869_P001	Maize	cytosol	30.51	33.54
CDX82308	Canola	plastid	30.79	33.44
CDX95461	Canola	plastid	30.51	33.33
GSMUA_Achr9P21400_001	Banana	cytosol	25.99	33.21
Bra001737.1-P	Field mustard	plastid	30.51	33.03
AT1G25410.1	Thale cress	plastid	29.1	30.12
Zm00001d041982_P001	Maize	plastid	27.68	20.85
Zm00001d036339_P001	Maize	cytosol, mitochondrion, nucleus, plastid	18.64	16.14

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	MapMan:11.4.1.1	Gene3D:3.40.50.300	UniProt:A0A1D6NF83	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	InterPro:IPT	ProteinID:ONM39136.1	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088
PANTHER:PTHR11088:SF40	SUPFAM:SSF52540	UniParc:UPI000221295F	EnsemblPlantsGene:Zm00001d043812	EnsemblPlants:Zm00001d043812_P001	EnsemblPlants:Zm00001d043812_T001
SEG:seg	:	:	:	:	:

Description

isopentenyl transferase3B isopentenyl transferase3B

Coordinates

chr3:-:210777669..210778733

Molecular Weight (calculated)

37578.9 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.193

Length

354 amino acids

Sequence
(BLAST)

001: MAAAAVAGIG SNDVPRKRLR RPSSVRIMER RSRGGSDGDC SCSSSGKELE PAEPTTRLVV IVGATGTGKT KLSIDAAVAL GGEVVNADKI QLYAGLDVTT
101: NKVPHADRRG VPHHLLGAVR ADAGELPAPS YRALASAAAA SVAARGRVPV VAGGSNSLVH ALLADRLGDG DPFEADGGYR PSLRFPCCLL WVDVDGAALD
201: DYLDRRVDDM VREGMVEELR EYFASTSPAE RASHAAGLGR AIGVPELGAH FAGRKTLAAA IDEIKVNTRV LAAAQVRKIR RMADAWGWPV RRLDATPTIR
301: ARLAGAGCAA EAAAWERDVG GPGLAAMRQF LDCHEQQQQQ RWPLVRRQCR GMAW

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.