Factsheet for Solyc04g007240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015411	Potato	cytosol	80.0	93.53
Solyc11g061800.1.1	Tomato	cytosol	10.46	68.0
Solyc11g063730.1.1	Tomato	cytosol	10.15	67.35
Solyc11g027990.1.1	Tomato	cytosol	11.38	62.71
Solyc05g009410.1.1	Tomato	cytosol	53.54	61.48
Solyc08g061790.1.1	Tomato	cytosol	11.08	58.06
GSMUA_Achr2P06730_001	Banana	cytosol	18.46	57.69
Solyc11g019900.1.1	Tomato	cytosol	10.46	57.63
Solyc11g019850.1.1	Tomato	cytosol	9.54	57.41
Solyc11g063470.1.1	Tomato	cytosol	9.23	55.56
Solyc11g061780.1.1	Tomato	cytosol	9.23	54.55
GSMUA_Achr1P12830_001	Banana	cytosol	19.08	51.24
KRH35941	Soybean	cytosol	46.46	49.67
CDY04228	Canola	plastid	47.08	47.96
VIT_01s0011g03640.t01	Wine grape	plastid	48.0	47.27
CDY22984	Canola	plastid	44.62	47.23
CDY07385	Canola	plastid	46.15	46.88
GSMUA_Achr3P29480_001	Banana	cytosol	37.23	46.36
KRG90838	Soybean	mitochondrion	32.92	46.32
CDY44896	Canola	plastid	47.69	46.27
CDX81518	Canola	plastid	48.62	45.4
Bra004037.1-P	Field mustard	plastid	46.46	45.35
Bra037537.1-P	Field mustard	plastid	44.62	44.75
CDY18571	Canola	plastid	44.62	44.75
GSMUA_Achr1P23110_001	Banana	cytosol	42.46	44.66
CDX82308	Canola	plastid	44.62	44.48
GSMUA_Achr4P06810_001	Banana	cytosol	41.85	44.44
CDX95461	Canola	plastid	43.69	43.83
Bra001737.1-P	Field mustard	plastid	44.0	43.73
AT1G68460.1	Thale cress	plastid	47.69	43.42
Bra033933.1-P	Field mustard	plastid	48.62	43.41
Os07t0190150-00	Rice	cytosol	31.38	43.4
AT3G19160.1	Thale cress	plastid	44.0	43.33
Solyc09g064910.1.1	Tomato	mitochondrion	41.23	42.68
Solyc11g019880.1.1	Tomato	cytosol	15.38	41.32
Solyc11g061860.1.1	Tomato	cytosol	17.54	41.01
AT4G24650.1	Thale cress	cytosol	40.0	40.88
Solyc11g020400.1.1	Tomato	cytosol	14.15	40.71
Os01t0688300-00	Rice	mitochondrion	40.62	39.29
AT1G25410.1	Thale cress	plastid	40.62	38.6
Solyc11g063740.1.1	Tomato	cytosol	23.38	37.25
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	42.15	37.13
TraesCS3D01G263000.1	Wheat	plastid	41.85	36.86
TraesCS3B01G296500.1	Wheat	plastid	41.23	36.81
Solyc11g061870.1.1	Tomato	cytosol	23.08	36.76
Solyc11g063710.1.1	Tomato	cytosol	22.77	36.27
Solyc08g061680.1.1	Tomato	cytosol, mitochondrion, nucleus	22.77	36.1
HORVU0Hr1G006770.3	Barley	cytosol	30.77	35.97
Solyc11g019890.1.1	Tomato	cytosol	22.46	35.61
Os05t0551700-01	Rice	mitochondrion	39.38	35.56
Solyc11g061810.1.1	Tomato	cytosol, mitochondrion, nucleus	19.69	35.56
Solyc11g061830.1.1	Tomato	cytosol	22.15	35.29
TraesCS1B01G396700.1	Wheat	plastid	37.54	35.26
Zm00001d011618_P001	Maize	plastid	37.54	35.06
Solyc11g061900.1.1	Tomato	cytosol	21.23	35.03
Solyc11g020380.1.1	Tomato	cytosol	21.23	34.85
Zm00001d038921_P001	Maize	mitochondrion, plastid	39.38	34.69
Zm00001d043812_P001	Maize	plastid	37.23	34.18
Solyc01g080150.2.1	Tomato	cytosol, extracellular, mitochondrion, plastid	34.46	34.04
KXG22495	Sorghum	mitochondrion	40.31	33.68
Solyc08g061690.1.1	Tomato	cytosol	20.31	33.33
KXG33157	Sorghum	mitochondrion, plastid	38.15	33.16
HORVU1Hr1G083530.2	Barley	plastid	37.23	32.27
TraesCS1A01G376300.1	Wheat	plastid	38.77	32.06
TraesCS1D01G383600.1	Wheat	plastid	38.46	31.89
Solyc11g063690.1.1	Tomato	cytosol	15.38	31.45
GSMUA_Achr9P21400_001	Banana	cytosol	25.54	29.96
Solyc11g061890.1.1	Tomato	cytosol	10.46	27.42
Solyc11g066960.1.1	Tomato	cytosol	36.0	25.05
Solyc11g019860.1.1	Tomato	cytoskeleton, cytosol	21.85	23.36
Solyc12g014190.1.1	Tomato	mitochondrion	20.62	14.92

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	MapMan:11.4.1.1	Gene3D:3.40.50.300	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0006400	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0052381	InterPro:IPT	UniProt:K4BNN1	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088
PANTHER:PTHR11088:SF51	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc04g007240.1	EnsemblPlants:Solyc04g007240.1.1	UniParc:UPI00027667D3	:

Description

No Description!

Coordinates

chr4:+:942579..943556

Molecular Weight (calculated)

37006.5 Da

IEP (calculated)

7.450

GRAVY (calculated)

-0.293

Length

325 amino acids

Sequence
(BLAST)

001: MRKLSFLSSA NHSNTLFFFP KWTRNVVISA TSSNVPRLQR SKKIVVIMGA TGCGKSKLSI DLATHFFPSI EVINSDKIQV YNGLDITTNK ISMNERCGIV
101: HHLLGEFKST ESQPEFTPSD FRSAGDFRIN EIVNRGKIPF IVGGSNSFIY ALLVKRFDSR FDIFESLNPV SEELRYQCCF IWVDAIAPVL NQYLDKRVDE
201: MLDSEMFEEL KEYFEKEGFS DSGSDGIRKA IGVPEFEKYF KGKISYEEAA MEIKENTRVL AERQVKKIMR LREGGWNIQR VDATETLTAK MVSEKMAGGE
301: NPAGKIWEEE VLKPSAKIVK QFLLE

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.