Factsheet for Solyc12g014190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039795	Potato	mitochondrion	96.66	96.44
VIT_19s0014g01630.t01	Wine grape	mitochondrion	64.59	73.23
KRH21996	Soybean	mitochondrion	66.37	66.52
CDY45111	Canola	plastid	31.4	64.09
CDX70907	Canola	plastid	63.7	61.77
CDX88863	Canola	plastid	63.7	61.77
Bra006535.1-P	Field mustard	plastid	63.47	61.56
Bra020081.1-P	Field mustard	plastid	63.47	61.42
GSMUA_Achr1P06960_001	Banana	cytosol	33.63	60.64
AT5G20040.3	Thale cress	mitochondrion	62.58	59.91
Zm00001d036339_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.0	55.99
TraesCS7D01G549300.1	Wheat	mitochondrion, plastid	53.9	53.3
KXG36879	Sorghum	mitochondrion	52.56	53.03
TraesCS7B01G486700.1	Wheat	mitochondrion, plastid	53.23	52.88
TraesCS7A01G560300.1	Wheat	mitochondrion	53.23	52.76
HORVU7Hr1G120070.12	Barley	mitochondrion	54.12	50.0
OQU77179	Sorghum	mitochondrion	53.01	47.13
Solyc11g063730.1.1	Tomato	cytosol	4.9	44.9
Solyc11g061800.1.1	Tomato	cytosol	4.9	44.0
Solyc11g019850.1.1	Tomato	cytosol	5.12	42.59
Solyc11g027990.1.1	Tomato	cytosol	5.35	40.68
Solyc11g061780.1.1	Tomato	cytosol	4.9	40.0
Solyc11g063470.1.1	Tomato	cytosol	4.68	38.89
Solyc11g019900.1.1	Tomato	cytosol	4.68	35.59
Solyc08g061790.1.1	Tomato	cytosol	4.9	35.48
Solyc11g061860.1.1	Tomato	cytosol	9.35	30.22
Solyc11g020400.1.1	Tomato	cytosol	7.13	28.32
Solyc11g019880.1.1	Tomato	cytosol	7.35	27.27
Solyc11g061830.1.1	Tomato	cytosol	11.36	25.0
Solyc11g061870.1.1	Tomato	cytosol	11.14	24.51
Solyc11g063740.1.1	Tomato	cytosol	11.14	24.51
Solyc11g061900.1.1	Tomato	cytosol	10.47	23.86
Solyc09g064910.1.1	Tomato	mitochondrion	16.48	23.57
Solyc11g063710.1.1	Tomato	cytosol	10.69	23.53
Solyc11g019890.1.1	Tomato	cytosol	10.47	22.93
Solyc11g020380.1.1	Tomato	cytosol	10.02	22.73
Solyc05g009410.1.1	Tomato	cytosol	14.25	22.61
Solyc08g061680.1.1	Tomato	cytosol, mitochondrion, nucleus	9.58	20.98
Solyc01g080150.2.1	Tomato	cytosol, extracellular, mitochondrion, plastid	15.37	20.97
Solyc11g061890.1.1	Tomato	cytosol	5.79	20.97
Solyc08g061690.1.1	Tomato	cytosol	9.13	20.71
Solyc04g007240.1.1	Tomato	plastid	14.92	20.62
Solyc11g061810.1.1	Tomato	cytosol, mitochondrion, nucleus	8.24	20.56
Solyc11g066960.1.1	Tomato	cytosol	19.82	19.06
Solyc11g063690.1.1	Tomato	cytosol	6.68	18.87
Solyc11g019860.1.1	Tomato	cytoskeleton, cytosol	10.24	15.13

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:3.40.50.300	MapMan:50.2.5	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006400	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0052381	InterPro:IPT	UniProt:K4DCV4
HAMAP:MF_00185	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF50	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc12g014190.1	EnsemblPlants:Solyc12g014190.1.1	TIGRFAMs:TIGR00174	UniParc:UPI000276A655	:	:

Description

tRNA dimethylallyltransferase 9 [Source:Projected from Arabidopsis thaliana (AT5G20040) UniProtKB/Swiss-Prot;Acc:Q9C5J6]

Coordinates

chr12:-:5034317..5040335

Molecular Weight (calculated)

50995.3 Da

IEP (calculated)

6.333

GRAVY (calculated)

-0.424

Length

449 amino acids

Sequence
(BLAST)

001: MISTVGTGGV RISSYLRLPY TVETLLRRRR LFTSCSASST KEKVIVISGP TGAGKSKLAL ELAKRINGEI ISADSVQVYR GLDVGSAKPS FDERKEVVHH
101: LVDILHPSED YSVGQFFEDA RQTTRDILDR GRVPIVAGGT GLYLRWFIYG RPDVPKASRE IAAEVDSELA SLQNDEDWNA AVQLLVKAGD PGAQSLPAND
201: WYRLRRRLEI VKSTGSPPSA FEVPYNSFRE QLVSGQIDAA DVKTSDDKLQ QNEIKDLDYD FLCYFLSTSR IDLYRSIDFR CEDMLLGADG ILSEARWLLD
301: VGLLPNSNSA TRAIGYRQAM EYLLRCREDG GWSSAGDFHD FLSEFQKESR NFAKRQMTWF RNEQIYEWID ASKPLEKVLS FICDSYNSQD GHLQMPESLR
401: MRKDIRNHRQ AAVLKTYRTI NRHFIGHEDC VDVLDWIKKI YGQPTDSLC

Best Arabidopsis Sequence Match ( AT5G20040.1 )
(BLAST)

001: MVIGSGVFLT RTCYLRLQPP SLVLRRRFCA ATTACSVPLN GNKKKKSEKE KVIVISGPTG AGKSRLAMEL AKRLNGEIIS ADSVQVYKGL DVGSAKPSDS
101: DRKVVPHHLI DILHPSQDYS VGQFYDDGRQ ATKDILNRGR VPIVTGGTGL YLRWFMYGKP DVPKPSPEVI AEAHDMLVGF QTEYNWDAAV ELVVNAGDPK
201: ASSLPRNDWY RLRRSLEILK STGSPPSSFR IPYDSFRVNL VAPDADDFLE DGSSADISIQ NIETDLDYDF LCFFLSSPRV ALYRSIDFRC EDMLSGPNGV
301: LSEARWLLDL GLLPNSNPAT RAIGYRQAME YLLQCRRYEG ESSPREFYAF LNKFQTASRN FAKRQMTWFR CEPMYHWLNA SKPLDSILQC IYDAYESEAE
401: MVEIPESLRM SKDVRDSREA SELKGYRSKN RHFVRREDCS SVLEWIRSEG CKSEASCVES AIA

Arabidopsis Description

ATIPT9Isopentenyltransferase 9 [Source:UniProtKB/TrEMBL;Acc:F4K2Q7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.