Factsheet for GSMUA_Achr3P29480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06810_001	Banana	cytosol	77.78	66.34
GSMUA_Achr1P12830_001	Banana	cytosol	29.89	64.46
GSMUA_Achr1P23110_001	Banana	cytosol	64.37	54.37
GSMUA_Achr2P06730_001	Banana	cytosol	19.16	48.08
PGSC0003DMT400015411	Potato	cytosol	47.13	44.24
GSMUA_Achr9P21400_001	Banana	cytosol	46.36	43.68
Solyc05g009410.1.1	Tomato	cytosol	45.59	42.05
Os01t0688300-00	Rice	mitochondrion	54.02	41.96
KRG90838	Soybean	mitochondrion	36.78	41.56
PGSC0003DMT400037749	Potato	cytosol	44.06	40.64
KRH35941	Soybean	cytosol	47.13	40.46
Zm00001d011618_P001	Maize	plastid	53.64	40.23
TraesCS1B01G396700.1	Wheat	plastid	53.26	40.17
Zm00001d043812_P001	Maize	plastid	53.26	39.27
Zm00001d038921_P001	Maize	mitochondrion, plastid	54.02	38.21
KXG33157	Sorghum	mitochondrion, plastid	54.41	37.97
HORVU0Hr1G006770.3	Barley	cytosol	40.23	37.77
HORVU1Hr1G083530.2	Barley	plastid	53.64	37.33
Solyc04g007240.1.1	Tomato	plastid	46.36	37.23
TraesCS3B01G296500.1	Wheat	plastid	51.72	37.09
TraesCS3D01G263000.1	Wheat	plastid	52.11	36.86
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	51.72	36.59
Os05t0551700-01	Rice	mitochondrion	50.19	36.39
TraesCS1D01G383600.1	Wheat	plastid	54.02	35.97
TraesCS1A01G376300.1	Wheat	plastid	54.02	35.88
VIT_01s0011g03640.t01	Wine grape	plastid	45.21	35.76
CDY22984	Canola	plastid	41.38	35.18
Os07t0190150-00	Rice	cytosol	31.42	34.89
KXG22495	Sorghum	mitochondrion	50.96	34.19
CDY04228	Canola	plastid	41.38	33.86
CDY44896	Canola	plastid	43.3	33.73
CDY07385	Canola	plastid	41.0	33.44
AT3G19160.1	Thale cress	plastid	42.15	33.33
CDX82308	Canola	plastid	41.0	32.82
CDX81518	Canola	plastid	43.68	32.76
Bra004037.1-P	Field mustard	plastid	41.38	32.43
Bra001737.1-P	Field mustard	plastid	40.61	32.42
Bra037537.1-P	Field mustard	plastid	39.85	32.1
CDY18571	Canola	plastid	39.85	32.1
Bra033933.1-P	Field mustard	plastid	44.44	31.87
CDX95461	Canola	plastid	39.46	31.79
AT4G24650.1	Thale cress	cytosol	38.7	31.76
GSMUA_AchrUn_...	Banana	cytosol	34.48	31.47
AT1G68460.1	Thale cress	plastid	42.53	31.09
GSMUA_Achr5P07950_001	Banana	cytosol	38.31	29.94
AT1G25410.1	Thale cress	plastid	38.31	29.24
GSMUA_Achr3P09080_001	Banana	extracellular	31.03	24.25
GSMUA_Achr11P...	Banana	cytosol	36.02	22.38
GSMUA_AchrUn_...	Banana	mitochondrion	28.35	21.2
GSMUA_Achr1P06960_001	Banana	cytosol	9.58	10.04

Protein Annotations

EnsemblPlants:GSMUA_Achr3P29480_001	EnsemblPlants:GSMUA_Achr3T29480_001	EnsemblPlantsGene:GSMUA_Achr3G29480_001	Gene3D:1.10.287.890	Gene3D:3.40.50.300	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPT	InterPro:P-loop_NTPase
KEGG:00908+2.5.1.75	ncoils:Coil	PANTHER:PTHR11088	PANTHER:PTHR11088:SF32	PFAM:PF01715	SEG:seg
SUPFAM:SSF52540	UniParc:UPI0002964204	UniProt:M0SIW4	MapMan:11.4.1.1	:	:

Description

Putative Adenylate isopentenyltransferase [Source:GMGC_GENE;Acc:GSMUA_Achr3G29480_001]

Coordinates

chr3:-:28606420..28607316

Molecular Weight (calculated)

27721.0 Da

IEP (calculated)

6.178

GRAVY (calculated)

-0.158

Length

261 amino acids

Sequence
(BLAST)

001: MGATGTGKSK LSIELATRFS GEVVNSDKIQ VYRGLDVTTN KMPVVERCGV PHHLLGEVDP AAGEVSPATF REMAARAIAG INGRGRLPVV AGGSNSMVHA
101: AMAAAALADQ LDRRVEEMVA AGMVEELGRY FAAEVESDAG ELRHPGLAKA IGVAELREYF RGEGRGTAAA YQAAMAAIKA NTRRLAEEQV RKIERLEEMG
201: WPLRRLDATA TVTARLAGSA TEQAEAAWER DVAGPSSAAV EQFLKEAVEG HHAVSSHLIY T

Best Arabidopsis Sequence Match ( AT3G19160.1 )
(BLAST)

001: MQNLTSTFVS PSMIPITSPR LRLPPPRSVV PMTTVCMEQS YKQKVVVIMG ATGSGKSCLS IDLATRFSGE IVNSDKIQFY DGLKVTTNQM SILERCGVPH
101: HLLGELPPDD SELTTSEFRS LASRSISEIT ARGNLPIIAG GSNSFIHALL VDRFDPKTYP FSSETSISSG LRYECCFLWV DVSVSVLFEY LSKRVDQMME
201: SGMFEELAGF YDPRYSGSAI RAHGIHKTIG IPEFDRYFSL YPPERKQKMS EWDQARKGAY DEAVQEIKEN TWRLAKKQIE RIMKLKSSGW DIQRLDATPS
301: FGRSSREIWD NTVLDESIKV VKRFLVKDKV

Arabidopsis Description

IPT8Adenylate isopentenyltransferase 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.