Factsheet for TraesCS1A01G376300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G396700.1	Wheat	plastid	79.39	90.17
TraesCS1D01G383600.1	Wheat	plastid	89.31	89.54
HORVU1Hr1G083530.2	Barley	plastid	77.86	81.6
Os05t0551700-01	Rice	mitochondrion	64.38	70.28
Zm00001d038921_P001	Maize	mitochondrion, plastid	61.32	65.31
KXG22495	Sorghum	mitochondrion	62.09	62.72
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	58.52	62.33
GSMUA_Achr1P12830_001	Banana	cytosol	17.05	55.37
GSMUA_Achr3P29480_001	Banana	cytosol	35.88	54.02
GSMUA_Achr2P06730_001	Banana	cytosol	14.25	53.85
GSMUA_Achr1P23110_001	Banana	cytosol	40.2	51.13
GSMUA_Achr4P06810_001	Banana	cytosol	38.68	49.67
CDY07385	Canola	plastid	34.86	42.81
PGSC0003DMT400015411	Potato	cytosol	30.03	42.45
Bra004037.1-P	Field mustard	plastid	35.37	41.74
VIT_01s0011g03640.t01	Wine grape	plastid	34.61	41.21
CDY04228	Canola	plastid	33.33	41.07
KRH35941	Soybean	cytosol	31.3	40.46
CDY44896	Canola	plastid	34.35	40.3
KRG90838	Soybean	mitochondrion	23.16	39.39
CDX81518	Canola	plastid	34.86	39.37
Solyc05g009410.1.1	Tomato	cytosol	27.99	38.87
AT3G19160.1	Thale cress	plastid	32.57	38.79
Solyc04g007240.1.1	Tomato	plastid	32.06	38.77
PGSC0003DMT400037749	Potato	cytosol	27.74	38.52
Bra033933.1-P	Field mustard	plastid	35.37	38.19
CDY22984	Canola	plastid	29.77	38.11
AT1G68460.1	Thale cress	plastid	34.1	37.53
TraesCS5A01G181100.1	Wheat	mitochondrion	27.48	36.99
AT4G24650.1	Thale cress	cytosol	29.77	36.79
CDY18571	Canola	plastid	30.03	36.42
Bra037537.1-P	Field mustard	plastid	30.03	36.42
CDX95461	Canola	plastid	29.77	36.11
GSMUA_Achr9P21400_001	Banana	cytosol	25.45	36.1
CDX82308	Canola	plastid	29.77	35.89
Bra001737.1-P	Field mustard	plastid	29.26	35.17
TraesCS5A01G460000.1	Wheat	plastid	31.3	35.04
AT1G25410.1	Thale cress	plastid	28.5	32.75
TraesCS3A01G136200.1	Wheat	mitochondrion	28.24	32.08
TraesCS1A01G057000.1	Wheat	cytosol	27.74	27.95
TraesCS2A01G265700.1	Wheat	plastid	26.97	24.54
TraesCS7A01G560300.1	Wheat	mitochondrion	18.32	15.89

Protein Annotations

EnsemblPlants:TraesCS1A01G376300.1	EnsemblPlantsGene:TraesCS1A01G376300	Gene3D:1.10.287.890	Gene3D:3.40.50.300	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPT	InterPro:P-loop_NTPase	KEGG:00908+2.5.1.75
PANTHER:PTHR11088	PANTHER:PTHR11088:SF32	PFAM:PF01715	SEG:seg	SUPFAM:SSF52540	MapMan:11.4.1.1

Description

No Description!

Coordinates

chr1A:-:550592585..550593766

Molecular Weight (calculated)

41457.6 Da

IEP (calculated)

8.926

GRAVY (calculated)

-0.109

Length

393 amino acids

Sequence
(BLAST)

001: MNTLANRVIT TTVTTVARGG GGRPPATSRR RPLRIWRAAA MSSSSSCSSS SSSSSGGGSG WGEEGERART RTRLVVIVGA TGTGKTKLSI DAARELRGEV
101: VNADKIQLYK GLDVTTNKVP LADRRGVEHH LLGAVPPEAG ALPPSSFRSL GAAKVASIAA RGLLPVVAGG SNSLIHALLA DLPDDDGAAL PEDPFSLDRC
201: YRPALRYPCC LLWVDVEEAL LAEYLDRRVD DMVGAGMVEE LRDYFAATTA AERAAHAPGL GKAIGVPELG EYLAGRRSFR AAVDDIKANT RRLAAAQVCK
301: IRRMADGWGW PVRRLDASAT IRARLAGAGP AAESASWERD VRGPGLAAIR AFLADQTCSH GDDATAIAIA KGVDEPAPLL MRLPRMQCCD MVV

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.