Factsheet for TraesCS1D01G383600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G396700.1	Wheat	plastid	81.89	92.77
TraesCS1A01G376300.1	Wheat	plastid	89.54	89.31
HORVU1Hr1G083530.2	Barley	plastid	80.1	83.73
Os05t0551700-01	Rice	mitochondrion	66.07	71.94
Zm00001d038921_P001	Maize	mitochondrion, plastid	62.76	66.67
KXG22495	Sorghum	mitochondrion	64.29	64.78
TraesCS3D01G263000.1	Wheat	plastid	60.46	64.23
GSMUA_Achr1P12830_001	Banana	cytosol	17.35	56.2
GSMUA_Achr3P29480_001	Banana	cytosol	35.97	54.02
GSMUA_Achr2P06730_001	Banana	cytosol	14.29	53.85
GSMUA_Achr1P23110_001	Banana	cytosol	40.56	51.46
GSMUA_Achr4P06810_001	Banana	cytosol	38.52	49.35
CDY07385	Canola	plastid	35.2	43.12
PGSC0003DMT400015411	Potato	cytosol	29.85	42.09
Bra004037.1-P	Field mustard	plastid	35.71	42.04
VIT_01s0011g03640.t01	Wine grape	plastid	34.95	41.52
KRH35941	Soybean	cytosol	31.89	41.12
CDY04228	Canola	plastid	33.42	41.07
CDY44896	Canola	plastid	34.69	40.6
KRG90838	Soybean	mitochondrion	23.47	39.83
CDX81518	Canola	plastid	35.2	39.66
Solyc05g009410.1.1	Tomato	cytosol	28.32	39.22
PGSC0003DMT400037749	Potato	cytosol	28.06	38.87
AT3G19160.1	Thale cress	plastid	32.65	38.79
Solyc04g007240.1.1	Tomato	plastid	31.89	38.46
Bra033933.1-P	Field mustard	plastid	35.71	38.46
CDY22984	Canola	plastid	29.85	38.11
AT1G68460.1	Thale cress	plastid	34.69	38.1
AT4G24650.1	Thale cress	cytosol	30.61	37.74
CDX82308	Canola	plastid	30.1	36.2
GSMUA_Achr9P21400_001	Banana	cytosol	25.51	36.1
TraesCS5D01G471100.1	Wheat	cytosol	32.14	35.9
Bra037537.1-P	Field mustard	plastid	29.59	35.8
CDY18571	Canola	plastid	29.59	35.8
CDX95461	Canola	plastid	29.34	35.49
Bra001737.1-P	Field mustard	plastid	29.59	35.47
TraesCS5D01G185500.1	Wheat	plastid	28.06	34.27
TraesCS3D01G137000.1	Wheat	cytosol, plastid	29.85	33.43
AT1G25410.1	Thale cress	plastid	28.57	32.75
TraesCS2D01G258000.3	Wheat	plastid	28.57	24.03
TraesCS7D01G549300.1	Wheat	mitochondrion, plastid	18.88	16.3

Protein Annotations

EnsemblPlants:TraesCS1D01G383600.1	EnsemblPlantsGene:TraesCS1D01G383600	Gene3D:1.10.287.890	Gene3D:3.40.50.300	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPT	InterPro:P-loop_NTPase	KEGG:00908+2.5.1.75
PANTHER:PTHR11088	PANTHER:PTHR11088:SF32	PFAM:PF01715	SEG:seg	SUPFAM:SSF52540	MapMan:11.4.1.1

Description

No Description!

Coordinates

chr1D:+:458132985..458134163

Molecular Weight (calculated)

41248.3 Da

IEP (calculated)

9.035

GRAVY (calculated)

-0.102

Length

392 amino acids

Sequence
(BLAST)

001: MTTLANRVIT TTITTAARGG GALATSRCPR RRPLRIWRAA AMTSSSSSSS SCSSSSSRGG GGSGWEEGRP RLVVIVGATG TGKTKLSIDA ARALGGEVVN
101: ADKIQLYQGL DVTTNKVPLA DRRGVAHHLL GAVPPEAGAL PPSSFRSLAA AKVASIAARG LLPVVAGGSN SLIHALLADL PDADDDALPE DPFSLDRCYR
201: PALRYPCCLL WVDVEEALLA EYLDRRVDDM VGAGMVEELR EYFAATTAQE RAAHAPGLGK AIGVPELGEY LAGRRSFRAA VDDIKANTRL LATAQVSKIR
301: RMADAWGWPV RRLDASATIR ARLAGAGPAA ESASWERDVR GPGLAAIRAF LADQTSHGHG DDATATAKGV DEPSAPPLLM RLPRMQRCDM VV

Best Arabidopsis Sequence Match ( AT1G25410.1 )
(BLAST)

001: MQQLMTLLSP PLSHSSLLPT VTTKFGSPRL VTTCMGHAGR KNIKDKVVLI TGTTGTGKSR LSVDLATRFF PAEIINSDKM QIYKGFEIVT NLIPLHEQGG
101: VPHHLLGQFH PQDGELTPAE FRSLATLSIS KLISSKKLPI VVGGSNSFNH ALLAERFDPD IDPFSPGSSL STICSDLRYK CCILWVDVLE PVLFQHLCNR
201: VDQMIESGLV EQLAELYDPV VDSGRRLGVR KTIGVEEFDR YFRVYPKEMD KGIWDLARKA AYEETVKGMK ERTCRLVKKQ KEKIMKLIRG GWEIKRLDAT
301: AAIMAELNQS TAKGEGKNGR EIWEKHIVDE SVEIVKKFLL EV

Arabidopsis Description

IPT6Adenylate isopentenyltransferase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6L1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.