Factsheet for VIT_01s0011g03640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35941	Soybean	cytosol	56.67	61.51
GSMUA_Achr2P06730_001	Banana	cytosol	19.09	60.58
KRG90838	Soybean	mitochondrion	41.82	59.74
GSMUA_Achr1P12830_001	Banana	cytosol	21.52	58.68
CDY22984	Canola	plastid	52.42	56.35
Bra037537.1-P	Field mustard	plastid	53.64	54.63
CDY18571	Canola	plastid	53.64	54.63
CDX95461	Canola	plastid	53.33	54.32
CDX82308	Canola	plastid	52.73	53.37
PGSC0003DMT400037749	Potato	cytosol	45.15	52.65
Bra001737.1-P	Field mustard	plastid	51.82	52.29
CDY07385	Canola	plastid	50.61	52.19
PGSC0003DMT400015411	Potato	cytosol	43.94	52.16
AT3G19160.1	Thale cress	plastid	51.82	51.82
CDY04228	Canola	plastid	50.0	51.72
Solyc05g009410.1.1	Tomato	cytosol	44.24	51.59
Bra004037.1-P	Field mustard	plastid	51.52	51.05
CDY44896	Canola	plastid	51.82	51.04
CDX81518	Canola	plastid	52.73	50.0
Bra033933.1-P	Field mustard	plastid	53.03	48.08
Solyc04g007240.1.1	Tomato	plastid	47.27	48.0
AT1G68460.1	Thale cress	plastid	51.21	47.34
AT1G25410.1	Thale cress	plastid	48.48	46.78
AT4G24650.1	Thale cress	cytosol	44.85	46.54
GSMUA_Achr1P23110_001	Banana	cytosol	42.42	45.31
GSMUA_Achr3P29480_001	Banana	cytosol	35.76	45.21
VIT_07s0104g00270.t01	Wine grape	cytosol, mitochondrion, plastid	43.03	44.24
GSMUA_Achr4P06810_001	Banana	cytosol	40.91	44.12
VIT_09s0070g00710.t01	Wine grape	mitochondrion	40.61	43.23
VIT_05s0020g02630.t01	Wine grape	cytosol	41.21	41.21
VIT_08s0040g01010.t01	Wine grape	cytosol, nucleus, plastid	32.12	41.09
Os07t0190150-00	Rice	cytosol	29.09	40.85
Os01t0688300-00	Rice	mitochondrion	40.61	39.88
Zm00001d011618_P001	Maize	plastid	40.0	37.93
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	41.52	37.13
TraesCS1B01G396700.1	Wheat	plastid	38.79	36.99
Os05t0551700-01	Rice	mitochondrion	40.3	36.94
Zm00001d038921_P001	Maize	mitochondrion, plastid	41.21	36.86
TraesCS3B01G296500.1	Wheat	plastid	40.61	36.81
TraesCS3D01G263000.1	Wheat	plastid	40.91	36.59
KXG33157	Sorghum	mitochondrion, plastid	41.21	36.36
KXG22495	Sorghum	mitochondrion	42.42	35.99
Zm00001d043812_P001	Maize	plastid	38.48	35.88
HORVU0Hr1G006770.3	Barley	cytosol	30.0	35.61
HORVU1Hr1G083530.2	Barley	plastid	40.0	35.2
TraesCS1D01G383600.1	Wheat	plastid	41.52	34.95
TraesCS1A01G376300.1	Wheat	plastid	41.21	34.61
GSMUA_Achr9P21400_001	Banana	cytosol	27.27	32.49
VIT_06s0061g01410.t01	Wine grape	nucleus	39.09	27.22
VIT_19s0014g01630.t01	Wine grape	mitochondrion	21.82	18.18

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	EntrezGene:100247527	wikigene:100247527	MapMan:11.4.1.1	Gene3D:3.40.50.300
EMBL:AM428301	ProteinID:CAN73470	ProteinID:CAN73470.1	ProteinID:CCB50908	ProteinID:CCB50908.1	UniProt:F6HEW3
EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006400	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0052381	InterPro:IPT	EntrezGene:LOC100247527
wikigene:LOC100247527	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF51	SUPFAM:SSF52540
UniParc:UPI00021092D1	ArrayExpress:VIT_01s0011g03640	EnsemblPlantsGene:VIT_01s0011g03640	EnsemblPlants:VIT_01s0011g03640.t01	RefSeq:XP_002279371	RefSeq:XP_002279371.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:3309093..3310130

Molecular Weight (calculated)

37295.6 Da

IEP (calculated)

8.845

GRAVY (calculated)

-0.432

Length

330 amino acids

Sequence
(BLAST)

001: MKLPVPTGYH PYCSKVQTLP LIPAIKPTFR RSGWARMDST VRRNRTKHKV VVIMGATGTG KSKLSIDLAT RFPAEIINSD KIQIYSGLDI TTNKIQMHER
101: QGVPHHLLGD FDSSHAEITP SQFRSVAAAA ISDISSRRKL PVLAGGSNSF IHALLVDRFD SESDPFNGSD SVSTELRYRC CFLWVDVSFA VLSDYLSKRV
201: DEMLGSGMLE ELAKFYDPDE DESRPKTGLR KAIGVPEFDR HFRKYPPDDP EMESFEEAVK AIKDNTCHLA KKQIEKILRM RGAGWDLKRL DATEAFRVLL
301: SSDSGKKSSE IWEKQVVEPS VKFVRRFLEE

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.