Factsheet for VIT_06s0061g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068271	Potato	cytosol	48.52	60.69
KRH30498	Soybean	cytosol	60.97	60.46
GSMUA_Achr11P...	Banana	cytosol	52.95	59.76
Solyc11g066960.1.1	Tomato	cytosol	58.86	59.74
AT2G27760.1	Thale cress	cytosol	56.54	57.51
Bra034366.1-P	Field mustard	cytosol	55.49	56.8
CDY30532	Canola	cytosol	55.27	56.47
KRH25178	Soybean	cytosol	34.18	53.82
EES02135	Sorghum	cytosol, plastid	50.63	51.17
Zm00001d041982_P001	Maize	plastid	50.63	51.06
Os01t0968700-01	Rice	cytosol	48.73	50.0
TraesCS2D01G258000.3	Wheat	plastid	48.31	49.14
TraesCS2B01G276300.2	Wheat	plastid	48.1	48.93
HORVU2Hr1G062320.8	Barley	plastid	48.95	48.64
TraesCS2A01G265700.1	Wheat	plastid	43.67	47.92
HORVU2Hr1G061960.1	Barley	cytosol	18.78	42.79
HORVU2Hr1G061970.1	Barley	cytosol	18.78	42.79
VIT_08s0040g01010.t01	Wine grape	cytosol, nucleus, plastid	23.0	42.25
VIT_01s0011g03640.t01	Wine grape	plastid	27.22	39.09
VIT_07s0104g00270.t01	Wine grape	cytosol, mitochondrion, plastid	26.16	38.63
VIT_05s0020g02630.t01	Wine grape	cytosol	26.58	38.18
CDX77133	Canola	plastid	56.96	38.03
VIT_09s0070g00710.t01	Wine grape	mitochondrion	24.68	37.74
VIT_19s0014g01630.t01	Wine grape	mitochondrion	18.35	21.97

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:1.10.287.890	EntrezGene:100251208	wikigene:100251208	Gene3D:3.40.50.300
MapMan:50.2.5	ProteinID:CBI17073	ProteinID:CBI17073.3	UniProt:D7SN44	EMBL:FN594957	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006139	GO:GO:0006400
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009824
GO:GO:0009987	GO:GO:0016740	GO:GO:0052381	InterPro:IPT	EntrezGene:LOC100251208	wikigene:LOC100251208
HAMAP:MF_00185	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF26	SUPFAM:SSF52540
TIGR:TC52119	TIGRFAMs:TIGR00174	UniParc:UPI0001BE0E50	ArrayExpress:VIT_06s0061g01410	EnsemblPlantsGene:VIT_06s0061g01410	EnsemblPlants:VIT_06s0061g01410.t01
unigene:Vvi.255	RefSeq:XP_002263747	RefSeq:XP_002263747.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:19262730..19283723

Molecular Weight (calculated)

53303.0 Da

IEP (calculated)

8.036

GRAVY (calculated)

-0.597

Length

474 amino acids

Sequence
(BLAST)

001: MEGDNGGQKV ENPNPNPNKT KVVVIMGATG SGKSKLAIDL ASHFPIEIIN SDSMQVYQGL DVLTNKVPLH EQNGVPHHLL GTISSNVEFT SKDFRDSAIP
101: LIDDIISRNN LPVLVGGTNY YIQALVSPFL LDDSAEEMDE SSVHDHPGGN NRNYKLDSKR GGSCSGYDRL KDLDPVAANR IHPNDHRKIN QYLGLYARTG
201: VLPSKLFQGK AMENWGRVDN FKYRCCFICV DAALPILDGY VGQRVDSMID AGLLDEVYDI YSLNADYTRG LRQAIGVREF EDFLKVLLSE GGHDKENGLL
301: KGNVREILKS SNNDQHNILL QEAIERVKAN TRRLVRRQKR RFNRLQSLFG WDIHYVDATE SSSCNPSASW AADVVEPSVK IIRSFLRDDA SSIPDLEGRN
401: GAEGLKSINR DLWTQYICKA CGDRVLRGLH EWEQHKQGRG HRKRISRSRN LQSSCLTEQQ QQQLLRHEAS KPRK

Best Arabidopsis Sequence Match ( AT2G27760.1 )
(BLAST)

001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN

Arabidopsis Description

IPT2tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.