CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
peroxisome 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25178	Soybean	cytosol	52.51	83.39
VIT_06s0061g01410.t01	Wine grape	nucleus	60.46	60.97
Solyc11g066960.1.1	Tomato	cytosol	56.69	58.03
PGSC0003DMT400068271	Potato	cytosol	45.19	56.99
GSMUA_Achr11P...	Banana	cytosol	49.37	56.19
AT2G27760.1	Thale cress	cytosol	53.14	54.51
Bra034366.1-P	Field mustard	cytosol	52.72	54.43
CDY30532	Canola	cytosol	52.72	54.31
TraesCS2D01G258000.3	Wheat	plastid	49.58	50.86
Zm00001d041982_P001	Maize	plastid	50.0	50.85
EES02135	Sorghum	cytosol, plastid	49.37	50.32
Os01t0968700-01	Rice	cytosol	48.54	50.22
TraesCS2B01G276300.2	Wheat	plastid	48.95	50.21
HORVU2Hr1G062320.8	Barley	plastid	49.79	49.9
TraesCS2A01G265700.1	Wheat	plastid	44.77	49.54
HORVU2Hr1G061960.1	Barley	cytosol	18.83	43.27
HORVU2Hr1G061970.1	Barley	cytosol	18.83	43.27
KRH35941	Soybean	cytosol	25.31	39.8
KRH67172	Soybean	plastid	24.27	37.54
KRG95498	Soybean	mitochondrion	24.27	37.42
CDX77133	Canola	plastid	54.18	36.48
KRG90838	Soybean	mitochondrion	17.57	36.36
KRH02126	Soybean	plastid	25.52	35.88
KRH51017	Soybean	plastid	25.1	35.71
KRH11376	Soybean	extracellular	24.48	34.21
KRH71448	Soybean	golgi, mitochondrion, plastid	23.22	33.95
KRH31999	Soybean	mitochondrion	23.64	32.85
KRH01762	Soybean	extracellular, golgi, vacuole	22.38	32.13
KRH46921	Soybean	cytosol	19.04	31.06
KRH20915	Soybean	cytosol	9.0	27.92
KRH21996	Soybean	mitochondrion	16.53	17.63

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:1.10.287.890	EntrezGene:100792690	Gene3D:3.30.160.60	Gene3D:3.40.50.300
MapMan:50.2.5	EMBL:ACUP02007026	EnsemblPlantsGene:GLYMA_11G188100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006400	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0052381	UniProt:I1LKV0	InterPro:IPT	EnsemblPlants:KRH30498
ProteinID:KRH30498	ProteinID:KRH30498.1	HAMAP:MF_00185	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088
PANTHER:PTHR11088:SF26	MetaCyc:PWY-2781	SUPFAM:SSF52540	TIGRFAMs:TIGR00174	UniParc:UPI000233CE6E	:

Description

hypothetical protein

Coordinates

chr11:+:25981523..25986063

Molecular Weight (calculated)

54106.5 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.429

Length

478 amino acids

Sequence
(BLAST)

001: MAATESTVTS NPSNRERPKP KPKLLVITGP TASGKSKLAV DLASHFPVEL INADSMQVYR GLDVLTNKLP LSHQNGVPHH LLGTVSPNVE FTAKAFRDSA
101: IPIIDDILAR NHLPVIVGGT NYYIQALVSP FLLDDSAEDM DESCLGDPTG SGNNFIGEND CSNNSYDLLK DIDPVAANRI HPNNHRKINQ YINLYNRTGV
201: LPSNIFQGKA AEKWGQVDNL RYDCCFICVD ASLPVLDRYV EQRVDCMMHE GLLNEVYDIY NLNAVYTRGL RQAIGVREFE PLLRTCVVKD MHERERELTE
301: GSSIEKGETL FNHNLMELVR SSSNTESTIL LEEAIEKVKL NTRRLIRRQK RMLSRLQTLF GWNIHYVDST ESISSKSEDV WTRQVVESAV KIVKSFLSEN
401: GTIFGTSNDT GMKIIQRDLW TQYICKACGD RVLRGFHEWE QHRQGRGHRK RISRLKRKAQ VPGFVEEVKY SASEQLDI

Best Arabidopsis Sequence Match ( AT2G27760.1 )
(BLAST)

001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN

Arabidopsis Description

IPT2tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.