CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034366.1-P	Field mustard	cytosol	97.63	97.84
AT2G27760.1	Thale cress	cytosol	79.09	78.76
CDX77133	Canola	plastid	93.75	61.27
PGSC0003DMT400068271	Potato	cytosol	47.2	57.78
Solyc11g066960.1.1	Tomato	cytosol	56.47	56.1
VIT_06s0061g01410.t01	Wine grape	nucleus	56.47	55.27
KRH30498	Soybean	cytosol	54.31	52.72
GSMUA_Achr11P...	Banana	cytosol	45.69	50.48
TraesCS2B01G276300.2	Wheat	plastid	48.49	48.28
TraesCS2D01G258000.3	Wheat	plastid	48.06	47.85
KRH25178	Soybean	cytosol	30.82	47.51
Os01t0968700-01	Rice	cytosol	46.98	47.19
TraesCS2A01G265700.1	Wheat	plastid	43.75	46.99
HORVU2Hr1G062320.8	Barley	plastid	48.28	46.96
Zm00001d041982_P001	Maize	plastid	46.77	46.17
EES02135	Sorghum	cytosol, plastid	46.34	45.84
HORVU2Hr1G061970.1	Barley	cytosol	19.4	43.27
HORVU2Hr1G061960.1	Barley	cytosol	19.4	43.27
CDX95461	Canola	plastid	23.92	34.26
CDY18571	Canola	plastid	23.71	33.95
CDY22984	Canola	plastid	22.41	33.88
CDY47191	Canola	cytosol	24.14	33.84
CDY13945	Canola	mitochondrion	23.92	33.23
CDX92563	Canola	mitochondrion	23.92	33.23
CDY02590	Canola	cytosol	23.92	33.23
CDX82308	Canola	plastid	23.28	33.13
CDX85119	Canola	plastid	23.28	32.53
CDX77492	Canola	plastid	23.28	32.53
CDX93935	Canola	plastid	23.06	32.04
CDX89173	Canola	mitochondrion, plastid	22.84	31.74
CDY04228	Canola	plastid	21.77	31.66
CDY44896	Canola	plastid	22.41	31.04
CDY63340	Canola	plastid	22.2	31.02
CDY07385	Canola	plastid	21.34	30.94
CDX81518	Canola	plastid	23.06	30.75
CDY67797	Canola	mitochondrion	21.98	30.72
CDY18104	Canola	cytosol	17.24	28.27
CDY45111	Canola	plastid	12.5	26.36
CDX88863	Canola	plastid	18.32	18.36
CDX70907	Canola	plastid	18.32	18.36

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:1.10.287.890	Gene3D:3.30.160.60	Gene3D:3.40.50.300	MapMan:50.2.5
GO:A0A078GZD0	UniProt:A0A078GZD0	EnsemblPlants:CDY30532	ProteinID:CDY30532	ProteinID:CDY30532.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00045253001	InterPro:IPT
HAMAP:MF_00185	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF26	MetaCyc:PWY-2781
SUPFAM:SSF52540	TIGRFAMs:TIGR00174	UniParc:UPI0004EE10C2	SEG:seg	:	:

Description

BnaA04g16010DBnaA04g16010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZD0]

Coordinates

chrLK032254:-:268565..270930

Molecular Weight (calculated)

52619.4 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.552

Length

464 amino acids

Sequence
(BLAST)

001: MSLNPSNGGI DEAKMKKKAK VVVIMGPTGS GKSKLAVDLA SHFPVEIINA DAMQIYSGLD VLTNKVTVNE QKGVTHHLLG TVSPDLEFTA KDFRDSTIPL
101: IEEILSRNHV PVLVGGTNYY IQALVSKFLL EDSKEDVDEC CSNVAAEGLD VESISGRDDL SHGYDLLKEL DPVAANRVHP NNHRKINQYL SLHASRGVLP
201: SKLYQENAAE NWGCINASSR FDYCLICMDA ETTVLDEYVG QRVDSMVDAG LLDEVYDIYK PGADYTRGLR QSIGVREFED FLKTYLPDTN SSANDKALKE
301: NLRKILDSPK DDKLRVMLEE AIDSVKLNTR RLLRRQKRRI NRLETVFGWN IHHVNATECL LSKSEEPWDV QVVKPATEIL RSFLKTETEL SHDSTLRKSM
401: ERDLWSQYVC EACGNKVLRG RHEWDHHTQG RVHRKRTARF KKAQNFENRE KQEEEEVGIC RETS

Best Arabidopsis Sequence Match ( AT2G27760.1 )
(BLAST)

001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN

Arabidopsis Description

IPT2tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.