CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040431.1-P	Field mustard	mitochondrion, plastid	100.0	100.0
CDX93935	Canola	plastid	96.71	96.71
CDY63340	Canola	plastid	84.43	84.94
AT3G63110.1	Thale cress	plastid	84.43	83.93
CDY67797	Canola	mitochondrion	83.23	83.73
VIT_07s0104g00270.t01	Wine grape	cytosol, mitochondrion, plastid	53.29	55.45
VIT_09s0070g00710.t01	Wine grape	mitochondrion	50.6	54.52
KRH67172	Soybean	plastid	48.5	52.43
KRG95498	Soybean	mitochondrion	47.31	50.97
Solyc09g064910.1.1	Tomato	mitochondrion	46.41	49.36
KRH71448	Soybean	golgi, mitochondrion, plastid	48.2	49.24
KRH31999	Soybean	mitochondrion	50.0	48.55
CDY13945	Canola	mitochondrion	48.5	48.5
CDY47191	Canola	cytosol	47.9	48.34
PGSC0003DMT400002509	Potato	mitochondrion	46.11	48.28
CDY02590	Canola	cytosol	48.2	48.2
CDX92563	Canola	mitochondrion	47.6	47.6
HORVU5Hr1G110100.1	Barley	mitochondrion	42.81	47.35
GSMUA_AchrUn_...	Banana	cytosol	39.82	46.5
CDY22984	Canola	plastid	41.92	45.6
CDX95461	Canola	plastid	43.71	45.06
Zm00001d034584_P001	Maize	plastid	44.31	44.98
CDY18571	Canola	plastid	43.11	44.44
CDY07385	Canola	plastid	42.52	44.38
HORVU3Hr1G025950.1	Barley	cytosol	45.21	43.64
CDX82308	Canola	plastid	42.52	43.56
OQU90772	Sorghum	plastid	44.01	43.24
Os07t0211700-00	Rice	plastid	44.91	43.23
TraesCS3B01G154100.1	Wheat	cytosol, mitochondrion, plastid	44.61	43.06
Zm00001d013021_P001	Maize	plastid	43.41	43.03
CDY04228	Canola	plastid	41.02	42.95
Zm00001d005239_P001	Maize	plastid	44.61	42.94
TraesCS3D01G137000.1	Wheat	cytosol, plastid	44.91	42.86
TraesCS5A01G181100.1	Wheat	mitochondrion	37.43	42.81
HORVU5Hr1G055240.1	Barley	cytosol, mitochondrion	37.43	42.66
HORVU5Hr1G055220.1	Barley	cytosol, mitochondrion	37.43	42.66
Zm00001d019171_P001	Maize	plastid	46.41	42.58
Os03t0810100-01	Rice	extracellular	45.51	42.58
CDX85119	Canola	plastid	42.22	42.47
CDY44896	Canola	plastid	42.52	42.39
EER96067	Sorghum	plastid	45.81	42.27
TraesCS3A01G136200.1	Wheat	mitochondrion	43.71	42.2
CDX77492	Canola	plastid	41.92	42.17
TraesCS5D01G471100.1	Wheat	cytosol	44.31	42.17
TraesCS5B01G469600.1	Wheat	cytosol	44.31	42.17
TraesCS5A01G460000.1	Wheat	plastid	44.31	42.17
CDX81518	Canola	plastid	43.11	41.38
Os05t0311801-00	Rice	cytosol	41.32	40.47
Zm00001d040810_P001	Maize	cytosol	41.92	39.77
Os03t0356900-01	Rice	extracellular	38.02	39.08
EES02950	Sorghum	cytosol	42.52	38.59
TraesCS5B01G178800.1	Wheat	mitochondrion, plastid	36.83	38.32
TraesCS5D01G185500.1	Wheat	plastid	36.53	38.01
Os03t0358900-00	Rice	cytosol	36.83	37.5
TraesCS1B01G074400.1	Wheat	cytosol, mitochondrion, plastid	35.93	36.81
CDY18104	Canola	cytosol	31.14	36.75
Zm00001d003869_P001	Maize	cytosol	35.33	36.65
GSMUA_AchrUn_...	Banana	mitochondrion	37.13	35.53
EES12063	Sorghum	cytosol	35.33	34.71
TraesCS1B01G323900.1	Wheat	plastid	28.14	33.57
HORVU1Hr1G011480.1	Barley	cytosol, mitochondrion, plastid	37.43	31.89
TraesCS1A01G057000.1	Wheat	cytosol	37.13	31.79
CDY30532	Canola	cytosol	31.74	22.84
CDY45111	Canola	plastid	13.47	20.45
CDX88863	Canola	plastid	21.86	15.77
CDX70907	Canola	plastid	21.86	15.77
CDX77133	Canola	plastid	32.63	15.35

Protein Annotations

EnsemblPlants:CDX89173	EnsemblPlantsGene:GSBRNA2T00149331001	Gene3D:1.10.287.890	Gene3D:3.40.50.300	GO:A0A078DPP1	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPT	InterPro:P-loop_NTPase
KEGG:00908+2.5.1.75	MetaCyc:PWY-2781	PANTHER:PTHR11088	PANTHER:PTHR11088:SF49	PFAM:PF01715	ProteinID:CDX89173
ProteinID:CDX89173.1	SUPFAM:SSF52540	UniParc:UPI0002545255	MapMan:11.4.1.1	:	:

Description

BnaA04g00130D

Coordinates

chrLK031857:-:1568294..1569657

Molecular Weight (calculated)

37339.2 Da

IEP (calculated)

8.052

GRAVY (calculated)

-0.137

Length

334 amino acids

Sequence
(BLAST)

001: MIMRISMAMC KQPLAPSTAL NFPPANFGPN MLTLSPSGPK DKVVVIMGAT GTGKSRLSVD IATRFPAEII NSDKIQVHQG LDIVTNKITT EESCGVPHHL
101: LGVLPPEADL TAVNFRHMAN LSVESILSRG KLPIIVGGSN SYVEALVDDE DYKFRSRYDC CFLWVDVALP VLHGSVNERV DKMVANGMVE EVRDFFDYSD
201: SNYSRGIKKA IGVPEFDMFF RNEPFLNTGD REELLSKVVD EIKRNTFGLA CKQRNKIERL RKIKKWCIQR LDATPVFTRR RSKVDADVAW ERLVAGPSTD
301: AVSRFLLDFT SPQPLVEALT AVAREREMSR CLVV

Best Arabidopsis Sequence Match ( AT3G63110.1 )
(BLAST)

001: MIMKISMAMC KQPLPPSPTL DFPPARFGPN MLTLNPYGPK DKVVVIMGAT GTGKSRLSVD IATRFRAEII NSDKIQVHQG LDIVTNKITS EESCGVPHHL
101: LGVLPPEADL TAANYCHMAN LSIESVLNRG KLPIIVGGSN SYVEALVDDK ENKFRSRYDC CFLWVDVALP VLHGFVSERV DKMVESGMVE EVREFFDFSN
201: SDYSRGIKKA IGFPEFDRFF RNEQFLNVED REELLSKVLE EIKRNTFELA CRQREKIERL RKVKKWSIQR VDATPVFTKR RSKMDANVAW ERLVAGPSTD
301: TVSRFLLDIA SRRPLVEAST AVAAAMEREL SRCLVA

Arabidopsis Description

IPT3IPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.