CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81518	Canola	plastid	97.61	93.97
Bra033933.1-P	Field mustard	plastid	98.51	90.66
CDY04228	Canola	plastid	82.39	86.52
CDY07385	Canola	plastid	82.39	86.25
AT1G68460.1	Thale cress	plastid	77.91	73.11
CDY22984	Canola	plastid	52.84	57.65
CDX95461	Canola	plastid	53.73	55.56
CDY18571	Canola	plastid	53.43	55.25
KRH35941	Soybean	cytosol	49.25	54.28
CDX82308	Canola	plastid	52.24	53.68
PGSC0003DMT400037749	Potato	cytosol	45.07	53.36
GSMUA_Achr1P12830_001	Banana	cytosol	19.1	52.89
KRG90838	Soybean	mitochondrion	35.82	51.95
VIT_01s0011g03640.t01	Wine grape	plastid	51.04	51.82
PGSC0003DMT400015411	Potato	cytosol	42.99	51.8
Solyc05g009410.1.1	Tomato	cytosol	43.58	51.59
GSMUA_Achr2P06730_001	Banana	cytosol	15.22	49.04
Solyc04g007240.1.1	Tomato	plastid	46.27	47.69
GSMUA_Achr1P23110_001	Banana	cytosol	40.0	43.37
GSMUA_Achr3P29480_001	Banana	cytosol	33.73	43.3
CDX93935	Canola	plastid	42.69	42.81
CDX89173	Canola	mitochondrion, plastid	42.39	42.52
GSMUA_Achr4P06810_001	Banana	cytosol	38.21	41.83
CDY63340	Canola	plastid	40.9	41.27
CDY67797	Canola	mitochondrion	40.9	41.27
CDX85119	Canola	plastid	38.21	38.55
CDX77492	Canola	plastid	38.21	38.55
Os01t0688300-00	Rice	mitochondrion	38.51	38.39
Os07t0190150-00	Rice	cytosol	26.27	37.45
CDY02590	Canola	cytosol	36.42	36.53
CDY47191	Canola	cytosol	35.82	36.25
CDX92563	Canola	mitochondrion	36.12	36.23
CDY13945	Canola	mitochondrion	36.12	36.23
Os05t0551700-01	Rice	mitochondrion	38.81	36.11
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	39.7	36.04
TraesCS1B01G396700.1	Wheat	plastid	36.72	35.55
TraesCS3D01G263000.1	Wheat	plastid	39.1	35.5
TraesCS3B01G296500.1	Wheat	plastid	38.51	35.44
Zm00001d011618_P001	Maize	plastid	36.72	35.34
KXG22495	Sorghum	mitochondrion	40.9	35.22
Zm00001d038921_P001	Maize	mitochondrion, plastid	38.51	34.96
HORVU1Hr1G083530.2	Barley	plastid	39.1	34.93
TraesCS1D01G383600.1	Wheat	plastid	40.6	34.69
KXG33157	Sorghum	mitochondrion, plastid	38.51	34.49
TraesCS1A01G376300.1	Wheat	plastid	40.3	34.35
Zm00001d043812_P001	Maize	plastid	35.82	33.9
HORVU0Hr1G006770.3	Barley	cytosol	27.76	33.45
CDY18104	Canola	cytosol	28.06	33.22
GSMUA_Achr9P21400_001	Banana	cytosol	25.37	30.69
CDY30532	Canola	cytosol	31.04	22.41
CDY45111	Canola	plastid	14.03	21.36
CDX70907	Canola	plastid	22.09	15.98
CDX88863	Canola	plastid	21.79	15.77
CDX77133	Canola	plastid	33.13	15.63

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	MapMan:11.4.1.1	Gene3D:3.40.50.300	GO:A0A078I4T6	UniProt:A0A078I4T6
EnsemblPlants:CDY44896	ProteinID:CDY44896	ProteinID:CDY44896.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00081050001
InterPro:IPT	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF51	MetaCyc:PWY-2781
SUPFAM:SSF52540	UniParc:UPI0004EE31A1	SEG:seg	:	:	:

Description

BnaA02g13860DBnaA02g13860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4T6]

Coordinates

chrLK032605:+:156047..157093

Molecular Weight (calculated)

38101.5 Da

IEP (calculated)

8.998

GRAVY (calculated)

-0.354

Length

335 amino acids

Sequence
(BLAST)

001: MVMTELNFLP TISDRFTTTS PSPSFSSHSL LPFTHRRTRQ SNHRPVSVRM EQSRPRNRKD KIVVILGATG AGKSRLSVDL ATRFPSEIIN SDKIQVYEGL
101: EITTNQITFP DRRGVPHHLL GYLPSEDGEL TAGDFRADAS NAVSDIISRK KLPIIAGGSN SFVHALLAER FDPKIDPFAS SSICRDLRYD SCFVWVDVSE
201: PVLFEYLLKR VDEMMGSGMF EELSGFYDPV KASRARFGIR KAIGVPEFDG YFKMRAAYDK AVEDIKENTL RLARRQVWKI EKLREAGWDI KRVDATASFR
301: AVMMSSSSSR EWREIWEEQV LEPSVKIVNR LLVED

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.