CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89173	Canola	mitochondrion, plastid	96.71	96.71
CDY63340	Canola	plastid	85.03	85.54
AT3G63110.1	Thale cress	plastid	84.73	84.23
CDY67797	Canola	mitochondrion	83.23	83.73
VIT_07s0104g00270.t01	Wine grape	cytosol, mitochondrion, plastid	53.89	56.07
VIT_09s0070g00710.t01	Wine grape	mitochondrion	51.2	55.16
KRH67172	Soybean	plastid	48.8	52.75
KRG95498	Soybean	mitochondrion	47.6	51.29
Solyc09g064910.1.1	Tomato	mitochondrion	47.01	50.0
KRH71448	Soybean	golgi, mitochondrion, plastid	48.8	49.85
CDY47191	Canola	cytosol	48.8	49.24
KRH31999	Soybean	mitochondrion	50.6	49.13
CDY02590	Canola	cytosol	49.1	49.1
CDY13945	Canola	mitochondrion	49.1	49.1
PGSC0003DMT400002509	Potato	mitochondrion	46.71	48.9
HORVU5Hr1G110100.1	Barley	mitochondrion	44.01	48.68
CDX92563	Canola	mitochondrion	48.2	48.2
GSMUA_AchrUn_...	Banana	cytosol	40.42	47.2
CDY22984	Canola	plastid	42.52	46.25
Zm00001d034584_P001	Maize	plastid	45.51	46.2
CDX95461	Canola	plastid	44.01	45.37
CDY18571	Canola	plastid	43.41	44.75
OQU90772	Sorghum	plastid	45.21	44.41
TraesCS3B01G154100.1	Wheat	cytosol, mitochondrion, plastid	45.81	44.22
HORVU3Hr1G025950.1	Barley	cytosol	45.81	44.22
Zm00001d013021_P001	Maize	plastid	44.61	44.21
CDX82308	Canola	plastid	43.11	44.17
Os07t0211700-00	Rice	plastid	45.81	44.09
TraesCS3D01G137000.1	Wheat	cytosol, plastid	46.11	44.0
CDY07385	Canola	plastid	41.92	43.75
Os03t0810100-01	Rice	extracellular	46.71	43.7
TraesCS3A01G136200.1	Wheat	mitochondrion	44.91	43.35
TraesCS5A01G460000.1	Wheat	plastid	45.51	43.3
TraesCS5B01G469600.1	Wheat	cytosol	45.51	43.3
TraesCS5D01G471100.1	Wheat	cytosol	45.51	43.3
TraesCS5A01G181100.1	Wheat	mitochondrion	37.72	43.15
CDX85119	Canola	plastid	42.81	43.07
HORVU5Hr1G055240.1	Barley	cytosol, mitochondrion	37.72	43.0
HORVU5Hr1G055220.1	Barley	cytosol, mitochondrion	37.72	43.0
CDX77492	Canola	plastid	42.52	42.77
CDY44896	Canola	plastid	42.81	42.69
Zm00001d005239_P001	Maize	plastid	44.31	42.65
CDY04228	Canola	plastid	40.72	42.63
Zm00001d019171_P001	Maize	plastid	46.41	42.58
EER96067	Sorghum	plastid	45.51	41.99
CDX81518	Canola	plastid	43.41	41.67
Os05t0311801-00	Rice	cytosol	41.92	41.06
Zm00001d040810_P001	Maize	cytosol	42.52	40.34
Os03t0356900-01	Rice	extracellular	38.02	39.08
EES02950	Sorghum	cytosol	42.81	38.86
TraesCS5B01G178800.1	Wheat	mitochondrion, plastid	37.13	38.63
TraesCS5D01G185500.1	Wheat	plastid	36.83	38.32
Os03t0358900-00	Rice	cytosol	37.43	38.11
CDY18104	Canola	cytosol	31.74	37.46
TraesCS1B01G074400.1	Wheat	cytosol, mitochondrion, plastid	36.23	37.12
Zm00001d003869_P001	Maize	cytosol	35.63	36.96
GSMUA_AchrUn_...	Banana	mitochondrion	38.02	36.39
EES12063	Sorghum	cytosol	35.93	35.29
TraesCS1B01G323900.1	Wheat	plastid	28.14	33.57
HORVU1Hr1G011480.1	Barley	cytosol, mitochondrion, plastid	38.32	32.65
TraesCS1A01G057000.1	Wheat	cytosol	37.72	32.31
CDY30532	Canola	cytosol	32.04	23.06
CDY45111	Canola	plastid	13.77	20.91
CDX88863	Canola	plastid	22.16	15.98
CDX70907	Canola	plastid	22.16	15.98
CDX77133	Canola	plastid	32.93	15.49

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	MapMan:11.4.1.1	Gene3D:3.40.50.300	GO:A0A078DX82	EnsemblPlants:CDX93935
ProteinID:CDX93935	ProteinID:CDX93935.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00156761001	InterPro:IPT
InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF49	MetaCyc:PWY-2781	SUPFAM:SSF52540
UniParc:UPI0004EF2A88	:	:	:	:	:

Description

BnaC04g20940D

Coordinates

chrLK031878:+:759201..760441

Molecular Weight (calculated)

37483.5 Da

IEP (calculated)

8.052

GRAVY (calculated)

-0.141

Length

334 amino acids

Sequence
(BLAST)

001: MIMRISMAMC KQPLPPSTAL NFPPANFGPN MLTLSPSGPK DKVVVIMGAT GTGKSRLSVD LATRFPAEII NSDKIQVHQG LDIVTNKITT EESCGVPHHL
101: LGVLPPEADL TAVNFRHMAN LSVESILSRG KLPIIVGGSN SYVEALVDDD DYKFRSRYDC CFLWVDVALP VLHGFVNERV DKMVENGMVE EVRDFFDYSD
201: SNYSRGIKKA IGVPEFDMFF RNEPFLNMGD REELLSKVVD EIKRNTFGLA CKQRNKIERL RRIKKWCIQR LDATPVFTRR KSKVDADVAW ERLVAGPSTD
301: AVSRFLLDFA SPRPLVEALT AVAREREMSR CVVV

Best Arabidopsis Sequence Match ( AT3G63110.1 )
(BLAST)

001: MIMKISMAMC KQPLPPSPTL DFPPARFGPN MLTLNPYGPK DKVVVIMGAT GTGKSRLSVD IATRFRAEII NSDKIQVHQG LDIVTNKITS EESCGVPHHL
101: LGVLPPEADL TAANYCHMAN LSIESVLNRG KLPIIVGGSN SYVEALVDDK ENKFRSRYDC CFLWVDVALP VLHGFVSERV DKMVESGMVE EVREFFDFSN
201: SDYSRGIKKA IGFPEFDRFF RNEQFLNVED REELLSKVLE EIKRNTFELA CRQREKIERL RKVKKWSIQR VDATPVFTKR RSKMDANVAW ERLVAGPSTD
301: TVSRFLLDIA SRRPLVEAST AVAAAMEREL SRCLVA

Arabidopsis Description

IPT3IPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.