CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82308	Canola	plastid	96.09	90.49
CDY18571	Canola	plastid	81.11	76.85
CDX95461	Canola	plastid	80.78	76.54
AT3G19160.1	Thale cress	plastid	75.24	70.0
CDY07385	Canola	plastid	57.0	54.69
GSMUA_Achr1P12830_001	Banana	cytosol	21.5	54.55
CDY04228	Canola	plastid	56.03	53.92
CDY44896	Canola	plastid	57.65	52.84
VIT_01s0011g03640.t01	Wine grape	plastid	56.35	52.42
GSMUA_Achr2P06730_001	Banana	cytosol	17.59	51.92
CDX81518	Canola	plastid	57.98	51.15
KRH35941	Soybean	cytosol	49.51	50.0
PGSC0003DMT400015411	Potato	cytosol	44.3	48.92
PGSC0003DMT400037749	Potato	cytosol	43.65	47.35
Solyc05g009410.1.1	Tomato	cytosol	43.0	46.64
KRG90838	Soybean	mitochondrion	33.88	45.02
Solyc04g007240.1.1	Tomato	plastid	47.23	44.62
CDX93935	Canola	plastid	46.25	42.52
CDY67797	Canola	mitochondrion	45.93	42.47
CDY63340	Canola	plastid	45.6	42.17
CDX89173	Canola	mitochondrion, plastid	45.6	41.92
GSMUA_Achr3P29480_001	Banana	cytosol	35.18	41.38
GSMUA_Achr1P23110_001	Banana	cytosol	41.04	40.78
GSMUA_Achr4P06810_001	Banana	cytosol	40.39	40.52
Os07t0190150-00	Rice	cytosol	29.32	38.3
CDY47191	Canola	cytosol	38.44	35.65
CDY02590	Canola	cytosol	38.76	35.63
CDX77492	Canola	plastid	38.44	35.54
CDX85119	Canola	plastid	38.11	35.24
CDX92563	Canola	mitochondrion	37.46	34.43
CDY13945	Canola	mitochondrion	37.46	34.43
Os01t0688300-00	Rice	mitochondrion	37.13	33.93
TraesCS1B01G396700.1	Wheat	plastid	36.81	32.66
Os05t0551700-01	Rice	mitochondrion	37.78	32.22
Zm00001d038921_P001	Maize	mitochondrion, plastid	38.11	31.71
Zm00001d043812_P001	Maize	plastid	36.16	31.36
HORVU1Hr1G083530.2	Barley	plastid	38.11	31.2
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	37.46	31.17
KXG22495	Sorghum	mitochondrion	39.41	31.11
TraesCS3B01G296500.1	Wheat	plastid	36.81	31.04
Zm00001d011618_P001	Maize	plastid	35.18	31.03
TraesCS3D01G263000.1	Wheat	plastid	37.13	30.89
HORVU0Hr1G006770.3	Barley	cytosol	27.69	30.58
CDY18104	Canola	cytosol	28.01	30.39
KXG33157	Sorghum	mitochondrion, plastid	36.48	29.95
TraesCS1D01G383600.1	Wheat	plastid	38.11	29.85
TraesCS1A01G376300.1	Wheat	plastid	38.11	29.77
GSMUA_Achr9P21400_001	Banana	cytosol	26.06	28.88
CDY30532	Canola	cytosol	33.88	22.41
CDY45111	Canola	plastid	14.01	19.55
CDX88863	Canola	plastid	24.76	16.41
CDX70907	Canola	plastid	24.1	15.98
CDX77133	Canola	plastid	35.18	15.21

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	MapMan:11.4.1.1	Gene3D:3.40.50.300	GO:A0A078GCB7	UniProt:A0A078GCB7
EnsemblPlants:CDY22984	ProteinID:CDY22984	ProteinID:CDY22984.1	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00021402001	InterPro:IPT	InterPro:P-loop_NTPase	PFAM:PF01715
PANTHER:PTHR11088	PANTHER:PTHR11088:SF51	MetaCyc:PWY-2781	SUPFAM:SSF52540	UniParc:UPI0004EF0893	SEG:seg

Description

BnaC03g40850DBnaC03g40850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCB7]

Coordinates

chrLK032138:+:394885..396232

Molecular Weight (calculated)

34779.6 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.267

Length

307 amino acids

Sequence
(BLAST)

001: MQELTSTFVS RSLVPTTYTR PQLRPKSIVT MTVCMDQSRK EKVVVIMGAT GTGKSRLSVA LADRFSGEII NSDKMQFYNG LEIATNQITI PERCGVPHHL
101: LGELPVDDSE LTASEFRSVA SRSISEISSR GKLPIIAGGS NSFVHALLVD RFDPVTNPFS SKPSISSELR YDCFFLWVDV SVSVLYDYLS KRVDQMMESG
201: MFEELASFYN PRNSRSTIRT GIHRAIGVPE FDRYFGAAYE EAVHEIKDNT WRLAKKQIER IMMLRSSGWE IHRLDSTASL RASSREVWET NVLRESVKNV
301: KRFLLKD

Best Arabidopsis Sequence Match ( AT3G19160.1 )
(BLAST)

001: MQNLTSTFVS PSMIPITSPR LRLPPPRSVV PMTTVCMEQS YKQKVVVIMG ATGSGKSCLS IDLATRFSGE IVNSDKIQFY DGLKVTTNQM SILERCGVPH
101: HLLGELPPDD SELTTSEFRS LASRSISEIT ARGNLPIIAG GSNSFIHALL VDRFDPKTYP FSSETSISSG LRYECCFLWV DVSVSVLFEY LSKRVDQMME
201: SGMFEELAGF YDPRYSGSAI RAHGIHKTIG IPEFDRYFSL YPPERKQKMS EWDQARKGAY DEAVQEIKEN TWRLAKKQIE RIMKLKSSGW DIQRLDATPS
301: FGRSSREIWD NTVLDESIKV VKRFLVKDKV

Arabidopsis Description

IPT8Adenylate isopentenyltransferase 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.