CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44896	Canola	plastid	93.97	97.61
Bra033933.1-P	Field mustard	plastid	97.13	92.86
CDY07385	Canola	plastid	79.02	85.94
CDY04228	Canola	plastid	78.45	85.58
AT1G68460.1	Thale cress	plastid	77.87	75.91
CDY22984	Canola	plastid	51.15	57.98
CDX95461	Canola	plastid	53.45	57.41
CDY18571	Canola	plastid	53.16	57.1
CDX82308	Canola	plastid	52.3	55.83
KRH35941	Soybean	cytosol	48.56	55.59
PGSC0003DMT400037749	Potato	cytosol	43.68	53.71
KRG90838	Soybean	mitochondrion	35.63	53.68
PGSC0003DMT400015411	Potato	cytosol	42.24	52.88
VIT_01s0011g03640.t01	Wine grape	plastid	50.0	52.73
GSMUA_Achr1P12830_001	Banana	cytosol	18.1	52.07
Solyc05g009410.1.1	Tomato	cytosol	42.24	51.94
GSMUA_Achr2P06730_001	Banana	cytosol	14.66	49.04
Solyc04g007240.1.1	Tomato	plastid	45.4	48.62
GSMUA_Achr1P23110_001	Banana	cytosol	38.79	43.69
GSMUA_Achr3P29480_001	Banana	cytosol	32.76	43.68
CDX93935	Canola	plastid	41.67	43.41
CDX89173	Canola	mitochondrion, plastid	41.38	43.11
GSMUA_Achr4P06810_001	Banana	cytosol	37.07	42.16
CDY63340	Canola	plastid	39.94	41.87
CDY67797	Canola	mitochondrion	39.94	41.87
CDX85119	Canola	plastid	37.36	39.16
CDX77492	Canola	plastid	37.36	39.16
Os01t0688300-00	Rice	mitochondrion	37.64	38.99
Os07t0190150-00	Rice	cytosol	25.86	38.3
CDY02590	Canola	cytosol	35.63	37.13
Os05t0551700-01	Rice	mitochondrion	38.22	36.94
CDY47191	Canola	cytosol	35.06	36.86
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	39.08	36.86
CDX92563	Canola	mitochondrion	35.34	36.83
CDY13945	Canola	mitochondrion	35.34	36.83
TraesCS1B01G396700.1	Wheat	plastid	35.92	36.13
TraesCS3D01G263000.1	Wheat	plastid	38.22	36.04
KXG22495	Sorghum	mitochondrion	40.23	35.99
TraesCS3B01G296500.1	Wheat	plastid	37.64	35.99
Zm00001d038921_P001	Maize	mitochondrion, plastid	37.93	35.77
HORVU1Hr1G083530.2	Barley	plastid	38.51	35.73
Zm00001d011618_P001	Maize	plastid	35.63	35.63
TraesCS1D01G383600.1	Wheat	plastid	39.66	35.2
TraesCS1A01G376300.1	Wheat	plastid	39.37	34.86
KXG33157	Sorghum	mitochondrion, plastid	37.36	34.76
Zm00001d043812_P001	Maize	plastid	34.77	34.18
HORVU0Hr1G006770.3	Barley	cytosol	27.3	34.17
CDY18104	Canola	cytosol	27.59	33.92
GSMUA_Achr9P21400_001	Banana	cytosol	24.43	30.69
CDY30532	Canola	cytosol	30.75	23.06
CDY45111	Canola	plastid	13.51	21.36
CDX70907	Canola	plastid	21.55	16.2
CDX77133	Canola	plastid	32.76	16.06
CDX88863	Canola	plastid	21.26	15.98

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.287.890	MapMan:11.4.1.1	Gene3D:3.40.50.300	GO:A0A078D2L0	EnsemblPlants:CDX81518
ProteinID:CDX81518	ProteinID:CDX81518.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00135162001	InterPro:IPT
InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF51	MetaCyc:PWY-2781	SUPFAM:SSF52540
UniParc:UPI0004EED9C1	SEG:seg	:	:	:	:

Description

BnaC02g18220D

Coordinates

chrLK031825:-:701259..702305

Molecular Weight (calculated)

39598.3 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.407

Length

348 amino acids

Sequence
(BLAST)

001: MVMTELNFLP TTSDRFTTTS PSPSFSAHSL LPFTHRRTRQ SNHRPVSVRM EQSRPRNRKD KIVVILGATG AGKSRLSVDL ATRFPSEIIN SDKIQVYEGL
101: EITTNQITIP DRRGVPHHLL GYLPSEDGEL TAGDFRVDAS NAVSDIVSRK KLPIIAGGSN SFVHALLAER FDPKIDPFSS SSICRDLRYD SCFIWVDVSE
201: PVLFEYLLKR VDEMMGSGMF EELSGFYDPV KASRARFGIR KAIGVPEFDG YFKMYPPEKE IKWDSGRRAA YDKAVGDIKE NTLRLARRQV WKIEKLREAG
301: WDIKRVDATA SFRAVMMSSS SSREWREIWE EQVLEPSVKI VNRLLVED

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.