CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011618_P001	Maize	plastid	84.49	90.8
Zm00001d043812_P001	Maize	plastid	83.96	88.7
Os01t0688300-00	Rice	mitochondrion	66.58	74.11
TraesCS3B01G296500.1	Wheat	plastid	71.66	73.63
TraesCS3D01G263000.1	Wheat	plastid	72.46	73.44
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	71.39	72.36
HORVU0Hr1G006770.3	Barley	cytosol	47.59	64.03
KXG22495	Sorghum	mitochondrion	64.17	61.7
GSMUA_Achr1P12830_001	Banana	cytosol	19.25	59.5
GSMUA_Achr3P29480_001	Banana	cytosol	37.97	54.41
GSMUA_Achr2P06730_001	Banana	cytosol	14.71	52.88
GSMUA_Achr1P23110_001	Banana	cytosol	42.78	51.78
GSMUA_Achr4P06810_001	Banana	cytosol	40.64	49.67
PGSC0003DMT400015411	Potato	cytosol	30.75	41.37
VIT_01s0011g03640.t01	Wine grape	plastid	36.36	41.21
CDY07385	Canola	plastid	35.03	40.94
KRH35941	Soybean	cytosol	32.89	40.46
Bra004037.1-P	Field mustard	plastid	35.56	39.94
Solyc05g009410.1.1	Tomato	cytosol	30.21	39.93
CDY04228	Canola	plastid	33.96	39.81
KRG90838	Soybean	mitochondrion	24.33	39.39
OQU90772	Sorghum	plastid	35.03	38.53
PGSC0003DMT400037749	Potato	cytosol	29.14	38.52
CDY44896	Canola	plastid	34.49	38.51
Solyc04g007240.1.1	Tomato	plastid	33.16	38.15
CDX81518	Canola	plastid	34.76	37.36
AT3G19160.1	Thale cress	plastid	32.89	37.27
AT4G24650.1	Thale cress	cytosol	31.28	36.79
Bra033933.1-P	Field mustard	plastid	35.56	36.54
CDY22984	Canola	plastid	29.95	36.48
AT1G68460.1	Thale cress	plastid	34.22	35.85
EER96067	Sorghum	plastid	34.49	35.64
GSMUA_Achr9P21400_001	Banana	cytosol	26.2	35.38
Bra037537.1-P	Field mustard	plastid	30.48	35.19
CDY18571	Canola	plastid	30.48	35.19
CDX95461	Canola	plastid	30.21	34.88
EES02950	Sorghum	cytosol	34.22	34.78
CDX82308	Canola	plastid	29.68	34.05
Bra001737.1-P	Field mustard	plastid	29.14	33.33
EES12063	Sorghum	cytosol	29.14	32.06
AT1G25410.1	Thale cress	plastid	28.07	30.7
EES02135	Sorghum	cytosol, plastid	26.47	21.11
KXG36879	Sorghum	mitochondrion	18.98	15.96
OQU77179	Sorghum	mitochondrion	19.52	14.46

Protein Annotations

EnsemblPlants:KXG33157	EnsemblPlantsGene:SORBI_3003G261700	Gene3D:1.10.287.890	Gene3D:3.40.50.300	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPT	InterPro:P-loop_NTPase	KEGG:00908+2.5.1.75
MetaCyc:PWY-2781	PANTHER:PTHR11088	PANTHER:PTHR11088:SF40	PFAM:PF01715	ProteinID:KXG33157	ProteinID:KXG33157.1
SEG:seg	SUPFAM:SSF52540	UniParc:UPI00081AD448	UniProt:A0A1B6Q5F3	MapMan:11.4.1.1	:

Description

hypothetical protein

Coordinates

chr3:+:59952751..59955168

Molecular Weight (calculated)

39378.1 Da

IEP (calculated)

9.348

GRAVY (calculated)

-0.226

Length

374 amino acids

Sequence
(BLAST)

001: MSGLITRIGT VARCSPMAAA AAVAGIDAPR KRPRRPSSGS VRMEGSRSRG GDGGGCCCSS SGKGLAPAEP RLVVIVGATG TGKTKLSIDA AVALGGEVVN
101: ADKIQLYAGL DVTTNKVPHA DRRGVPHHLL GAVRADAGEL PAPSYRALAA EAAASVAARG RVPVVAGGSN SLIHALLADD RLGGGDPFKA DDDDGCYRPS
201: LRLPCCLLWV DVDGAVLDDY LDRRVDDMVR EGMVEELREY FASTSPAERA AHAAGLGKAI GVPELGDHFA GRKTLAAAID EIKANTRVLA AAQVRKIRRM
301: ADAWGWPVRR LDATPTVRAR LAGAGRDAEA AAWERDVRGP GLAAMRQFLD SHHEQQQQQQ RWPLARRQCR GMVG

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.