CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041982_P001	Maize	plastid	86.99	86.81
Os01t0968700-01	Rice	cytosol	73.99	75.11
TraesCS2B01G276300.2	Wheat	plastid	73.77	74.25
TraesCS2D01G258000.3	Wheat	plastid	73.35	73.82
TraesCS2A01G265700.1	Wheat	plastid	66.74	72.45
HORVU2Hr1G062320.8	Barley	plastid	72.92	71.7
GSMUA_Achr11P...	Banana	cytosol	55.22	61.67
HORVU2Hr1G061960.1	Barley	cytosol	27.08	61.06
HORVU2Hr1G061970.1	Barley	cytosol	27.08	61.06
VIT_06s0061g01410.t01	Wine grape	nucleus	51.17	50.63
Solyc11g066960.1.1	Tomato	cytosol	49.68	49.89
KRH30498	Soybean	cytosol	50.32	49.37
PGSC0003DMT400068271	Potato	cytosol	39.87	49.34
AT2G27760.1	Thale cress	cytosol	47.12	47.42
Bra034366.1-P	Field mustard	cytosol	46.06	46.65
CDY30532	Canola	cytosol	45.84	46.34
KRH25178	Soybean	cytosol	29.0	45.18
OQU90772	Sorghum	plastid	26.44	36.47
EER96067	Sorghum	plastid	27.08	35.08
EES12063	Sorghum	cytosol	23.88	32.94
EES02950	Sorghum	cytosol	25.59	32.61
CDX77133	Canola	plastid	46.48	30.7
KXG33157	Sorghum	mitochondrion, plastid	21.11	26.47
KXG22495	Sorghum	mitochondrion	20.26	24.42
KXG36879	Sorghum	mitochondrion	19.62	20.67
OQU77179	Sorghum	mitochondrion	19.83	18.42

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:1.10.287.890	Gene3D:3.30.160.60	Gene3D:3.40.50.300	MapMan:50.2.5
EntrezGene:8078046	UniProt:C5XJC3	EnsemblPlants:EES02135	ProteinID:EES02135	ProteinID:EES02135.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006139
GO:GO:0006400	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691
GO:GO:0009824	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	GO:GO:0052381	InterPro:IPP_transferase_euk
InterPro:IPT	HAMAP:MF_00185	InterPro:P-loop_NTPase	PFAM:PF01715	PIRSF:PIRSF039110	PANTHER:PTHR11088
PANTHER:PTHR11088:SF26	MetaCyc:PWY-2781	EnsemblPlantsGene:SORBI_3003G442000	SUPFAM:SSF52540	SUPFAM:SSF57667	TIGRFAMs:TIGR00174
UniParc:UPI0001A84CB2	RefSeq:XP_002457015.1	InterPro:Znf_C2H2_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:74062987..74065819

Molecular Weight (calculated)

52319.6 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.471

Length

469 amino acids

Sequence
(BLAST)

001: MADPSAAAAA ANPSPGAGEE GAACSPPSPS QRGRGKVVIV MGATGAGKSR LAVDLAAHFA GVEVVSADSM QLYRGLDVLT NKVPLHEQNG VPHHLLSVID
101: PSVEFTCHDF RDHAVPIIQE ILDRGGLPVI VGGTNFYIQS LVSPFLFDDM AEEMHDCTLR EHIDDDRGLT NDDEDSGYER LKDIDPVAAQ RIHPNDHRKI
201: KRYLELYATT GSLPSDLFQG EAAKKWGRPS NSRFDCCFLW VDADLQALDS YVNKRVDCMM DAGLLNEVCN IYDADALYTQ GLRQAIGVRE FDEFFRLYLP
301: RQESGEDSSA NLLDIHDDQL KSLLDEAVSQ LKANTRRLVR RQRRRLHRLG KDFGWNLHHF DATEAFCCAT GDSWQKKVVE PCVDVVKRFL SDDSTVLPST
401: SASDGVVGSV RGPSRELWTQ YVCEACDNRV LRGAHEWEQH KQGRGHRKRV QRLKQKSLRP RPLLSQDCN

Best Arabidopsis Sequence Match ( AT2G27760.1 )
(BLAST)

001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN

Arabidopsis Description

IPT2tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.