Factsheet for Zm00001d041982_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02135	Sorghum	cytosol, plastid	86.81	86.99
Os01t0968700-01	Rice	cytosol	72.98	74.24
TraesCS2D01G258000.3	Wheat	plastid	73.19	73.82
TraesCS2B01G276300.2	Wheat	plastid	72.98	73.61
TraesCS2A01G265700.1	Wheat	plastid	65.96	71.76
HORVU2Hr1G062320.8	Barley	plastid	72.13	71.07
GSMUA_Achr11P...	Banana	cytosol	55.74	62.38
HORVU2Hr1G061960.1	Barley	cytosol	27.45	62.02
HORVU2Hr1G061970.1	Barley	cytosol	27.45	62.02
VIT_06s0061g01410.t01	Wine grape	nucleus	51.06	50.63
Solyc11g066960.1.1	Tomato	cytosol	50.0	50.32
KRH30498	Soybean	cytosol	50.85	50.0
PGSC0003DMT400068271	Potato	cytosol	39.57	49.08
AT2G27760.1	Thale cress	cytosol	47.45	47.85
Bra034366.1-P	Field mustard	cytosol	46.17	46.87
CDY30532	Canola	cytosol	46.17	46.77
KRH25178	Soybean	cytosol	28.09	43.85
Zm00001d034584_P001	Maize	plastid	27.23	38.91
Zm00001d013021_P001	Maize	plastid	27.66	38.58
Zm00001d005239_P001	Maize	plastid	27.66	37.46
Zm00001d019171_P001	Maize	plastid	28.3	36.54
Zm00001d040810_P001	Maize	cytosol	27.23	36.36
Zm00001d003869_P001	Maize	cytosol	23.83	34.78
CDX77133	Canola	plastid	47.02	31.13
Zm00001d011618_P001	Maize	plastid	21.7	29.31
Zm00001d038921_P001	Maize	mitochondrion, plastid	22.13	28.18
Zm00001d043812_P001	Maize	plastid	20.85	27.68
Zm00001d036339_P001	Maize	cytosol, mitochondrion, nucleus, plastid	18.51	21.27

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	EntrezGene:100158231	Gene3D:3.40.50.300	MapMan:50.2.5	EMBL:BT062185
UniProt:C0HIM9	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009824
GO:GO:0009987	GO:GO:0016740	InterPro:IPT	HAMAP:MF_00185	ProteinID:ONM34230.1	InterPro:P-loop_NTPase
PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF26	SUPFAM:SSF52540	SUPFAM:SSF57667	TIGRFAMs:TIGR00174
UniParc:UPI0001948646	EnsemblPlantsGene:Zm00001d041982	EnsemblPlants:Zm00001d041982_P001	EnsemblPlants:Zm00001d041982_T001	InterPro:Znf_C2H2_sf	SEG:seg

Description

isopentenyl transferase1 isopentenyl transferase1

Coordinates

chr3:-:146545493..146548229

Molecular Weight (calculated)

52243.9 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.451

Length

470 amino acids

Sequence
(BLAST)

001: MAHPSAAAAA VSSTAPAANP SSGAREEGGA RSPPSPSPSQ RGRAKVVIVM GATGAGKSRL AVDLAAHFAG VEVVSADSMQ LYRGLDVLTN KAPLHEQNGV
101: PHHLLSVIDP SVEFTCRDFR DRAVPIIQEI VDRGGLPVVV GGTNFYIQAL VSPFLLDDMA EEMQGCTLRD HIDDGLTDED EGNGFERLKE IDPVAAQRIH
201: PNDHRKIKRY LELYATTGAL PSDLFQGEAA KKWGRPSNSR LDCCFLWVDA DLQVLDSYVN KRVDCMMDGG LLDEVCSIYD ADAVYTQGLR QAIGVREFDE
301: FFRAYLPRKE SGEGSCASLL GMHDDQLKSL LDEAVSQLKA NTRRLVRRQR RRLHRLSKDF GWNLHRVDAT EAFFCATDDS WQKKVVKPCV DVVRRFLSDN
401: STVLPSTSAS DPSSRELWTQ YVCEACGNRV LRGAHEWEQH RQGRGHRKRV QRLKQKSLRP WPSLLPQDRS

Best Arabidopsis Sequence Match ( AT2G27760.1 )
(BLAST)

001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN

Arabidopsis Description

IPT2tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.