Factsheet for GSMUA_Achr11P12450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G258000.3	Wheat	plastid	62.14	56.01
TraesCS2B01G276300.2	Wheat	plastid	61.9	55.79
TraesCS2A01G265700.1	Wheat	plastid	57.38	55.79
Zm00001d041982_P001	Maize	plastid	62.38	55.74
HORVU2Hr1G062320.8	Barley	plastid	62.86	55.35
EES02135	Sorghum	cytosol, plastid	61.67	55.22
Os01t0968700-01	Rice	cytosol	60.24	54.76
VIT_06s0061g01410.t01	Wine grape	nucleus	59.76	52.95
HORVU2Hr1G061970.1	Barley	cytosol	25.48	51.44
HORVU2Hr1G061960.1	Barley	cytosol	25.48	51.44
KRH30498	Soybean	cytosol	56.19	49.37
Solyc11g066960.1.1	Tomato	cytosol	54.29	48.82
PGSC0003DMT400068271	Potato	cytosol	42.86	47.49
GSMUA_Achr1P12830_001	Banana	cytosol	13.57	47.11
AT2G27760.1	Thale cress	cytosol	52.14	47.0
Bra034366.1-P	Field mustard	cytosol	50.48	45.79
CDY30532	Canola	cytosol	50.48	45.69
GSMUA_Achr2P06730_001	Banana	cytosol	10.95	44.23
KRH25178	Soybean	cytosol	31.67	44.19
GSMUA_Achr3P29480_001	Banana	cytosol	22.38	36.02
GSMUA_Achr4P06810_001	Banana	cytosol	25.48	34.97
GSMUA_AchrUn_...	Banana	cytosol	23.81	34.97
GSMUA_Achr1P23110_001	Banana	cytosol	25.71	34.95
GSMUA_Achr5P07950_001	Banana	cytosol	26.9	33.83
CDX77133	Canola	plastid	50.95	30.14
GSMUA_Achr3P09080_001	Banana	extracellular	21.43	26.95
GSMUA_Achr9P21400_001	Banana	cytosol	17.38	26.35
GSMUA_AchrUn_...	Banana	mitochondrion	21.19	25.5
GSMUA_Achr1P06960_001	Banana	cytosol	9.52	16.06

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:1.10.287.890	Gene3D:3.30.160.60	Gene3D:3.40.50.300	MapMan:50.2.5
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009691	GO:GO:0009824	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSMUA_Achr11G12450_001	EnsemblPlants:GSMUA_Achr11P12450_001	EnsemblPlants:GSMUA_Achr11T12450_001	InterPro:IPT	UniProt:M0RRM5
HAMAP:MF_00185	InterPro:P-loop_NTPase	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF26	SUPFAM:SSF52540
TIGRFAMs:TIGR00174	UniParc:UPI0002960AD5	SEG:seg	:	:	:

Description

tRNA dimethylallyltransferase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G12450_001]

Coordinates

chr11:-:11504253..11508333

Molecular Weight (calculated)

47428.4 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.333

Length

420 amino acids

Sequence
(BLAST)

001: MGATGAGKSR VAIDLASHFS GVEVVNADSM QVYRGLDVLT NKVPLPDRNG VPHHLLGSID PSVEFTSRDF RDLSIPIIDD ILSRDGLPVV VGGTNYYIQA
101: LVSPFLVDDV VENLASCSLD GPQELGGADE VASFEQLKEI DPVAANRIHP NDHRKIKRYL NLYESSGVLP SHLFQGENAE KWGRADSFRY NCCFVWVDVS
201: LPVLDRYVEQ RVDCMIDAGL LDEVHDIYSP NTDYTRGICQ AIGVREFEMF FKSYFSIEES NEVPRPDLSE ILDMNGGELK TLLIEAINKL KANTRKLVRR
301: QKRRLNQLKA YFGWDLHCID ATEAFSCNSG DTWHKIVIEP CVNVVRNFLL EESSSLTGKQ EPCLQSKNLV LRDLWTQYIC EACGNQVLRG AHEWEQHKQG
401: RGHRKRIFRL KKRLDSSRAG

Best Arabidopsis Sequence Match ( AT2G27760.1 )
(BLAST)

001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN

Arabidopsis Description

IPT2tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.