CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30498	Soybean	cytosol	83.39	52.51
HORVU2Hr1G061960.1	Barley	cytosol	25.91	37.5
HORVU2Hr1G061970.1	Barley	cytosol	25.91	37.5
PGSC0003DMT400068271	Potato	cytosol	44.19	35.09
VIT_06s0061g01410.t01	Wine grape	nucleus	53.82	34.18
Solyc11g066960.1.1	Tomato	cytosol	50.5	32.55
GSMUA_Achr11P...	Banana	cytosol	44.19	31.67
AT2G27760.1	Thale cress	cytosol	48.51	31.33
CDY30532	Canola	cytosol	47.51	30.82
Bra034366.1-P	Field mustard	cytosol	46.51	30.24
EES02135	Sorghum	cytosol, plastid	45.18	29.0
Os01t0968700-01	Rice	cytosol	44.19	28.79
TraesCS2B01G276300.2	Wheat	plastid	44.19	28.54
TraesCS2D01G258000.3	Wheat	plastid	43.85	28.33
Zm00001d041982_P001	Maize	plastid	43.85	28.09
KRH20915	Soybean	cytosol	14.29	27.92
HORVU2Hr1G062320.8	Barley	plastid	44.19	27.88
TraesCS2A01G265700.1	Wheat	plastid	37.87	26.39
KRH35941	Soybean	cytosol	24.58	24.34
KRH67172	Soybean	plastid	22.92	22.33
KRG95498	Soybean	mitochondrion	22.26	21.61
KRH71448	Soybean	golgi, mitochondrion, plastid	22.59	20.8
KRH51017	Soybean	plastid	22.92	20.54
KRH02126	Soybean	plastid	22.92	20.29
CDX77133	Canola	plastid	47.84	20.28
KRH11376	Soybean	extracellular	22.92	20.18
KRG90838	Soybean	mitochondrion	15.28	19.91
KRH01762	Soybean	extracellular, golgi, vacuole	21.93	19.82
KRH46921	Soybean	cytosol	19.27	19.8
KRH31999	Soybean	mitochondrion	22.59	19.77
KRH21996	Soybean	mitochondrion	13.29	8.93

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:1.10.287.890	MapMan:50.2.5	EMBL:ACUP02007220	EnsemblPlantsGene:GLYMA_12G086300
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006400	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0052381	InterPro:IPT	UniProt:K7LTS0	EnsemblPlants:KRH25178
ProteinID:KRH25178	ProteinID:KRH25178.1	PFAM:PF01715	PANTHER:PTHR11088	PANTHER:PTHR11088:SF26	MetaCyc:PWY-2781
UniParc:UPI000295C394	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:6987142..6990386

Molecular Weight (calculated)

34661.9 Da

IEP (calculated)

8.044

GRAVY (calculated)

-0.310

Length

301 amino acids

Sequence
(BLAST)

001: MAGNYYNVVI IHKQKIIDDI LARNHLPVIV GALITISRGS GDSLFAEDDC SNNSYDMLKD IDPVAANRIH PNNHRKINQY INLYNRTGVL PSNIFQGKAA
101: EMKSNNLRYD CCFICVDASL RVLDRYVEQR VDCMMYEGLL NEVYNIYNLN AVYTRGLRQA IGVREFEPLL RTCVVKDMYE RERELTEGPS IEKGATLFNR
201: NLMELVRSSS NTEPTILLEE AIEKVKLNTR RLVRRQKRML SRLQTLFGWN IHYVDSTESI SSKSEDVWTR QVVESAVEIV KSFLMRMEAC HPPLGRQMTL
301: G

Best Arabidopsis Sequence Match ( AT2G27760.1 )
(BLAST)

001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN

Arabidopsis Description

IPT2tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.