CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30532	Canola	cytosol	61.27	93.75
AT2G27760.1	Thale cress	cytosol	51.83	78.97
PGSC0003DMT400068271	Potato	cytosol	31.13	58.31
VIT_06s0061g01410.t01	Wine grape	nucleus	38.03	56.96
Solyc11g066960.1.1	Tomato	cytosol	37.18	56.53
KRH30498	Soybean	cytosol	36.48	54.18
GSMUA_Achr11P...	Banana	cytosol	30.14	50.95
TraesCS2B01G276300.2	Wheat	plastid	32.11	48.93
TraesCS2D01G258000.3	Wheat	plastid	31.97	48.71
HORVU2Hr1G062320.8	Barley	plastid	32.25	48.01
KRH25178	Soybean	cytosol	20.28	47.84
Os01t0968700-01	Rice	cytosol	31.13	47.84
TraesCS2A01G265700.1	Wheat	plastid	28.87	47.45
Zm00001d041982_P001	Maize	plastid	31.13	47.02
EES02135	Sorghum	cytosol, plastid	30.7	46.48
HORVU2Hr1G061970.1	Barley	cytosol	12.54	42.79
HORVU2Hr1G061960.1	Barley	cytosol	12.54	42.79
CDY47191	Canola	cytosol	16.62	35.65
CDX95461	Canola	plastid	16.2	35.49
CDY18571	Canola	plastid	16.06	35.19
CDY22984	Canola	plastid	15.21	35.18
CDY02590	Canola	cytosol	16.48	35.03
CDY13945	Canola	mitochondrion	16.2	34.43
CDX92563	Canola	mitochondrion	16.2	34.43
CDY04228	Canola	plastid	15.35	34.17
CDX82308	Canola	plastid	15.63	34.05
CDX85119	Canola	plastid	15.77	33.73
CDX77492	Canola	plastid	15.77	33.73
CDY07385	Canola	plastid	15.07	33.44
CDY44896	Canola	plastid	15.63	33.13
CDX93935	Canola	plastid	15.49	32.93
CDX81518	Canola	plastid	16.06	32.76
CDX89173	Canola	mitochondrion, plastid	15.35	32.63
CDY63340	Canola	plastid	14.93	31.93
CDY67797	Canola	mitochondrion	14.79	31.63
CDY18104	Canola	cytosol	11.69	29.33
CDY45111	Canola	plastid	8.45	27.27
CDX88863	Canola	plastid	12.11	18.57
CDX70907	Canola	plastid	12.11	18.57

Protein Annotations

KEGG:00908+2.5.1.75	Gene3D:1.10.20.140	Gene3D:1.10.287.890	Gene3D:3.40.50.300	MapMan:50.2.5	GO:A0A078CPZ9
EnsemblPlants:CDX77133	ProteinID:CDX77133	ProteinID:CDX77133.1	ncoils:Coil	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:GORAB	EnsemblPlantsGene:GSBRNA2T00127738001	InterPro:IPT
HAMAP:MF_00185	InterPro:P-loop_NTPase	PFAM:PF01715	PFAM:PF04949	PANTHER:PTHR11088	PANTHER:PTHR11088:SF26
MetaCyc:PWY-2781	SUPFAM:SSF52540	TIGRFAMs:TIGR00174	UniParc:UPI0004EDB7E0	SEG:seg	:

Description

BnaC04g39280D

Coordinates

chrLK031809:+:1353140..1357156

Molecular Weight (calculated)

80096.2 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.601

Length

710 amino acids

Sequence
(BLAST)

001: MATTRQIVEQ PQSPLIQRIK SSGTISINGS PMNDDKEEEF SRSSLALFKA KEDEIERRKM EVRDRVQSKL GLAEEATRRL ADIREELESL TDPMRKEISA
101: IRKRVDAINR ELKPLGQSCQ KKEKEFKEAL EAYNDKNKEK AMFVSKLVEL VTESEKLRMT KLEELSKSID ISGIGAPAGV PAPGFEPWPL RNLHVGCSTR
201: DQKPLHGEPH GDALAASMLC SLRSLVWTTS VGPGYSSERR REEVSAMPVN PSNGGIEEEK MKKKAKVVVI MGPTGSGKSK LAVDLASHFP VEIINADAMQ
301: IYSGLDVLTN KVTINEQKGV PHHLLGTVSP DMEFTAKDFR DSAIPLIEEI ISRNHVPVLV GGTNYYIQAL VSKFLLEDST EDSDECCSNV APGLDVESIS
401: GRDDLSHGYD LLKELDPVAA NRVHPNNHRK INQYLSLHAS RGVLPSKLHQ ENAAENWGCI DASSRFDYCL ICMDAETTVL DEYVGQRVDS MVDAGLLDEV
501: YDIYKPGADY TRGLRQSIGV REFEDFLKTY LPDTNSSAND KALKENLRKI LDSPKDDKLR VMLEEAIDCV KLNTRRLLRR QKRRINRLET VFGWNIHHVD
601: ATECLLSKSE DLWDAQVVKS AAEILQSFLE TETELGHDST LRKSVERDLW SQYVCEACGN KVLRGRHEWD HHTQGRVHRK RTARFKKTQN FKNREKQQEE
701: EEVGICRGTS

Best Arabidopsis Sequence Match ( AT2G27760.1 )
(BLAST)

001: MMMLNPSNGG IEGEKMKKKA KVVVIMGPTG SGKSKLAVDL ASHFPVEIIN ADAMQIYSGL DVLTNKVTVD EQKGVPHHLL GTVSSDMEFT ARDFRDFTVP
101: LIEEIVSRNH IPVLVGGTHY YIQAVVSKFL LDDAAEDTEE CCADVASVVD QDMVVESVFG RDDLSHGYEL LKELDPVAAN RIHPNNHRKI NQYLSLHASR
201: GVLPSKLYQG KTAENWGCIN ASRFDYCLIC MDAETAVLDR YVEQRVDAMV DAGLLDEVYD IYKPGADYTR GLRQSIGVRE FEDFLKIHLS ETCAGHLTSL
301: SNDDKVMKEN LRKILNFPKD DKLRIMLEEA IDRVKLNTRR LLRRQKRRVS RLETVFGWNI HYIDATEYIL SKSEESWNAQ VVKPASEIIR CFLETETESG
401: RDPTSGKSIE RDLWTQYVCE ACGNKILRGR HEWEHHKQGR THRKRTTRHK NSQTYKNREV QEAEVN

Arabidopsis Description

IPT2tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.