Factsheet for TraesCS3D01G263000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G296500.1	Wheat	plastid	95.12	96.43
TraesCS3A01G263300.1	Wheat	mitochondrion, plastid	94.85	94.85
HORVU0Hr1G006770.3	Barley	cytosol	59.08	78.42
Os01t0688300-00	Rice	mitochondrion	69.92	76.79
Zm00001d011618_P001	Maize	plastid	69.11	73.28
KXG33157	Sorghum	mitochondrion, plastid	73.44	72.46
Zm00001d043812_P001	Maize	plastid	68.02	70.9
TraesCS1D01G383600.1	Wheat	plastid	64.23	60.46
GSMUA_Achr1P12830_001	Banana	cytosol	18.16	55.37
GSMUA_Achr2P06730_001	Banana	cytosol	14.91	52.88
GSMUA_Achr3P29480_001	Banana	cytosol	36.86	52.11
GSMUA_Achr1P23110_001	Banana	cytosol	42.55	50.81
GSMUA_Achr4P06810_001	Banana	cytosol	40.92	49.35
PGSC0003DMT400015411	Potato	cytosol	33.6	44.6
CDY07385	Canola	plastid	36.59	42.19
Solyc04g007240.1.1	Tomato	plastid	36.86	41.85
KRH35941	Soybean	cytosol	34.42	41.78
Bra004037.1-P	Field mustard	plastid	37.13	41.14
CDY04228	Canola	plastid	35.5	41.07
VIT_01s0011g03640.t01	Wine grape	plastid	36.59	40.91
PGSC0003DMT400037749	Potato	cytosol	30.89	40.28
Solyc05g009410.1.1	Tomato	cytosol	30.89	40.28
KRG90838	Soybean	mitochondrion	25.2	40.26
CDY44896	Canola	plastid	35.5	39.1
AT3G19160.1	Thale cress	plastid	34.42	38.48
TraesCS5D01G471100.1	Wheat	cytosol	36.59	38.46
CDX81518	Canola	plastid	36.04	38.22
CDY22984	Canola	plastid	30.89	37.13
AT4G24650.1	Thale cress	cytosol	31.98	37.11
Bra033933.1-P	Field mustard	plastid	36.59	37.09
AT1G68460.1	Thale cress	plastid	35.77	36.97
CDY18571	Canola	plastid	31.44	35.8
CDX95461	Canola	plastid	31.44	35.8
Bra037537.1-P	Field mustard	plastid	31.44	35.8
CDX82308	Canola	plastid	31.44	35.58
Bra001737.1-P	Field mustard	plastid	31.17	35.17
GSMUA_Achr9P21400_001	Banana	cytosol	25.75	34.3
TraesCS3D01G137000.1	Wheat	cytosol, plastid	31.44	33.14
TraesCS5D01G185500.1	Wheat	plastid	28.73	33.02
AT1G25410.1	Thale cress	plastid	29.27	31.58
TraesCS2D01G258000.3	Wheat	plastid	29.81	23.61
TraesCS7D01G549300.1	Wheat	mitochondrion, plastid	21.95	17.84

Protein Annotations

EnsemblPlants:TraesCS3D01G263000.1	EnsemblPlantsGene:TraesCS3D01G263000	Gene3D:1.10.287.890	Gene3D:3.40.50.300	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPT	InterPro:P-loop_NTPase	KEGG:00908+2.5.1.75
PANTHER:PTHR11088	PANTHER:PTHR11088:SF40	PFAM:PF01715	SEG:seg	SUPFAM:SSF52540	MapMan:11.4.1.1

Description

No Description!

Coordinates

chr3D:-:365053513..365054622

Molecular Weight (calculated)

39186.9 Da

IEP (calculated)

9.314

GRAVY (calculated)

-0.154

Length

369 amino acids

Sequence
(BLAST)

001: MSGLISRIGS GVRSPMASAA IAGVGGTHKR PRWPSVSMER TRVRGCCSCS CSGTKMEAER GDTRLVVIVG ATGTGKTKLS IDAALELGGE VVNADKIQLY
101: RGLDVTTNKV MPADRRGVAH HLLGAVRADA GELPASSFRS LAAAKAADIA ARGHVPVVAG GSNSLIHAFL AKRFDAHAPR DPFAAAATGY RPALRFPCCL
201: LWVDVDEAVL DEYLDRRVDD MLGEGMVEEL REYFATTSAS ERASHAGLRK AIGVPEIGDY LAGRKSLTAA VDEIKANTRV LAAAQVGKIR RMADGWGWPV
301: RRLDATGTVL ARLAGAGRDA EAAAWHRDVR GPGLAAMRQF LRSQGLSRHD DADEEDGVVT RRQCHGMVG

Best Arabidopsis Sequence Match ( AT1G68460.1 )
(BLAST)

001: MTELNFHLLP IISDRFTTTT TTSPSFSSHS SSSSSLLSFT KRRRKHQPLV SSIRMEQSRS RNRKDKVVVI LGATGAGKSR LSVDLATRFP SEIINSDKIQ
101: VYEGLEITTN QITLQDRRGV PHHLLGVINP EHGELTAGEF RSAASNVVKE ITSRQKVPII AGGSNSFVHA LLAQRFDPKF DPFSSGSCLI SSDLRYECCF
201: IWVDVSETVL YEYLLRRVDE MMDSGMFEEL SRFYDPVKSG LETRFGIRKA IGVPEFDGYF KEYPPEKKMI KWDALRKAAY DKAVDDIKRN TWTLAKRQVK
301: KIEMLKDAGW EIERVDATAS FKAVMMKSSS EKKWRENWEE QVLEPSVKIV KRHLVQN

Arabidopsis Description

IPT1Adenylate isopentenyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94ID3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.